Example 1: Preprocessing Workflow

This is meant as a very simple example for a preprocessing workflow. In this workflow we will conduct the following steps:

  1. Motion correction of functional images with FSL's MCFLIRT
  2. Coregistration of functional images to anatomical images (according to FSL's FEAT pipeline)
  3. Smoothing of coregistered functional images with FWHM set to 4mm and 8mm
  4. Artifact Detection in functional images (to detect outlier volumes)

Preparation

Before we can start with anything we first need to download the data (the other 9 subjects in the dataset). This can be done very quickly with the following datalad command.

Note: This might take a while, as datalad needs to download ~700MB of data

In [ ]:
%%bash
datalad get -J 4 /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz \
                /data/ds000114/sub-*/ses-test/func/*fingerfootlips*
get(notneeded): /data/ds000114/sub-01/ses-test/func/sub-01_ses-test_task-fingerfootlips_bold.nii.gz (file) [already present]
get(notneeded): /data/ds000114/sub-02/ses-test/func/sub-02_ses-test_task-fingerfootlips_bold.nii.gz (file) [already present]
get(notneeded): /data/ds000114/sub-03/ses-test/func/sub-03_ses-test_task-fingerfootlips_bold.nii.gz (file) [already present]
get(notneeded): /data/ds000114/sub-04/ses-test/func/sub-04_ses-test_task-fingerfootlips_bold.nii.gz (file) [already present]
get(notneeded): /data/ds000114/sub-05/ses-test/func/sub-05_ses-test_task-fingerfootlips_bold.nii.gz (file) [already present]
get(notneeded): /data/ds000114/sub-06/ses-test/func/sub-06_ses-test_task-fingerfootlips_bold.nii.gz (file) [already present]
get(notneeded): /data/ds000114/sub-07/ses-test/func/sub-07_ses-test_task-fingerfootlips_bold.nii.gz (file) [already present]
get(notneeded): /data/ds000114/sub-08/ses-test/func/sub-08_ses-test_task-fingerfootlips_bold.nii.gz (file) [already present]
get(notneeded): /data/ds000114/sub-09/ses-test/func/sub-09_ses-test_task-fingerfootlips_bold.nii.gz (file) [already present]
get(notneeded): /data/ds000114/sub-10/ses-test/func/sub-10_ses-test_task-fingerfootlips_bold.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-01/anat/sub-01_t1w_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-01/anat/sub-01_t1w_space-mni152nlin2009casym_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-06/anat/sub-06_t1w_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-06/anat/sub-06_t1w_space-mni152nlin2009casym_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-10/anat/sub-10_t1w_preproc.nii.gz (file) [already present]
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-10/anat/sub-10_t1w_space-mni152nlin2009casym_preproc.nii.gz (file) [already present]
action summary:
  get (notneeded: 30)

Inspect the data

For every subject we have one anatomical T1w and 5 functional images. As a short recap, the image properties of the anatomy and the fingerfootlips functional image are:

In [ ]:
%%bash
cd /data/ds000114/
nib-ls derivatives/fmriprep/sub-01/*/*t1w_preproc.nii.gz sub-01/ses-test/f*/*fingerfootlips*.nii.gz
derivatives/fmriprep/sub-01/anat/sub-01_t1w_preproc.nii.gz           float32 [256, 156, 256]      1.00x1.30x1.00        sform
sub-01/ses-test/func/sub-01_ses-test_task-fingerfootlips_bold.nii.gz  int16  [ 64,  64,  30, 184] 4.00x4.00x4.00x2.50   sform

So, let's start!

Imports

First, let's import all the modules we later will be needing.

In [ ]:
%matplotlib inline
from os.path import join as opj
import os
import json
from nipype.interfaces.fsl import (BET, ExtractROI, FAST, FLIRT, ImageMaths,
                                   MCFLIRT, SliceTimer, Threshold)
from nipype.interfaces.spm import Smooth
from nipype.interfaces.utility import IdentityInterface
from nipype.interfaces.io import SelectFiles, DataSink
from nipype.algorithms.rapidart import ArtifactDetect
from nipype import Workflow, Node

Experiment parameters

It's always a good idea to specify all parameters that might change between experiments at the beginning of your script. We will use one functional image for fingerfootlips task for ten subjects.

In [ ]:
experiment_dir = '/output'
output_dir = 'datasink'
working_dir = 'workingdir'

# list of subject identifiers
subject_list = ['01', '02', '03', '04', '05', '06', '07', '08', '09', '10']

# list of session identifiers
task_list = ['fingerfootlips']

# Smoothing widths to apply
fwhm = [4, 8]

# TR of functional images
with open('/data/ds000114/task-fingerfootlips_bold.json', 'rt') as fp:
    task_info = json.load(fp)
TR = task_info['RepetitionTime']

# Isometric resample of functional images to voxel size (in mm)
iso_size = 4

Specify Nodes for the main workflow

Initiate all the different interfaces (represented as nodes) that you want to use in your workflow.

In [ ]:
# ExtractROI - skip dummy scans
extract = Node(ExtractROI(t_min=4, t_size=-1, output_type='NIFTI'),
               name="extract")

# MCFLIRT - motion correction
mcflirt = Node(MCFLIRT(mean_vol=True,
                       save_plots=True,
                       output_type='NIFTI'),
               name="mcflirt")

# SliceTimer - correct for slice wise acquisition
slicetimer = Node(SliceTimer(index_dir=False,
                             interleaved=True,
                             output_type='NIFTI',
                             time_repetition=TR),
                  name="slicetimer")

# Smooth - image smoothing
smooth = Node(Smooth(), name="smooth")
smooth.iterables = ("fwhm", fwhm)

# Artifact Detection - determines outliers in functional images
art = Node(ArtifactDetect(norm_threshold=2,
                          zintensity_threshold=3,
                          mask_type='spm_global',
                          parameter_source='FSL',
                          use_differences=[True, False],
                          plot_type='svg'),
           name="art")

Coregistration Workflow

Initiate a workflow that coregistrates the functional images to the anatomical image (according to FSL's FEAT pipeline).

In [ ]:
# BET - Skullstrip anatomical Image
bet_anat = Node(BET(frac=0.5,
                    robust=True,
                    output_type='NIFTI_GZ'),
                name="bet_anat")

# FAST - Image Segmentation
segmentation = Node(FAST(output_type='NIFTI_GZ'),
                name="segmentation")

# Select WM segmentation file from segmentation output
def get_wm(files):
    return files[-1]

# Threshold - Threshold WM probability image
threshold = Node(Threshold(thresh=0.5,
                           args='-bin',
                           output_type='NIFTI_GZ'),
                name="threshold")

# FLIRT - pre-alignment of functional images to anatomical images
coreg_pre = Node(FLIRT(dof=6, output_type='NIFTI_GZ'),
                 name="coreg_pre")

# FLIRT - coregistration of functional images to anatomical images with BBR
coreg_bbr = Node(FLIRT(dof=6,
                       cost='bbr',
                       schedule=opj(os.getenv('FSLDIR'),
                                    'etc/flirtsch/bbr.sch'),
                       output_type='NIFTI_GZ'),
                 name="coreg_bbr")

# Apply coregistration warp to functional images
applywarp = Node(FLIRT(interp='spline',
                       apply_isoxfm=iso_size,
                       output_type='NIFTI'),
                 name="applywarp")

# Apply coregistration warp to mean file
applywarp_mean = Node(FLIRT(interp='spline',
                            apply_isoxfm=iso_size,
                            output_type='NIFTI_GZ'),
                 name="applywarp_mean")

# Create a coregistration workflow
coregwf = Workflow(name='coregwf')
coregwf.base_dir = opj(experiment_dir, working_dir)

# Connect all components of the coregistration workflow
coregwf.connect([(bet_anat, segmentation, [('out_file', 'in_files')]),
                 (segmentation, threshold, [(('partial_volume_files', get_wm),
                                             'in_file')]),
                 (bet_anat, coreg_pre, [('out_file', 'reference')]),
                 (threshold, coreg_bbr, [('out_file', 'wm_seg')]),
                 (coreg_pre, coreg_bbr, [('out_matrix_file', 'in_matrix_file')]),
                 (coreg_bbr, applywarp, [('out_matrix_file', 'in_matrix_file')]),
                 (bet_anat, applywarp, [('out_file', 'reference')]),
                 (coreg_bbr, applywarp_mean, [('out_matrix_file', 'in_matrix_file')]),
                 (bet_anat, applywarp_mean, [('out_file', 'reference')]),
                 ])

Specify input & output stream

Specify where the input data can be found & where and how to save the output data.

In [ ]:
# Infosource - a function free node to iterate over the list of subject names
infosource = Node(IdentityInterface(fields=['subject_id', 'task_name']),
                  name="infosource")
infosource.iterables = [('subject_id', subject_list),
                        ('task_name', task_list)]

# SelectFiles - to grab the data (alternativ to DataGrabber)
anat_file = opj('derivatives', 'fmriprep', 'sub-{subject_id}', 'anat', 'sub-{subject_id}_t1w_preproc.nii.gz')
func_file = opj('sub-{subject_id}', 'ses-test', 'func',
                'sub-{subject_id}_ses-test_task-{task_name}_bold.nii.gz')

templates = {'anat': anat_file,
             'func': func_file}
selectfiles = Node(SelectFiles(templates,
                               base_directory='/data/ds000114'),
                   name="selectfiles")

# Datasink - creates output folder for important outputs
datasink = Node(DataSink(base_directory=experiment_dir,
                         container=output_dir),
                name="datasink")

## Use the following DataSink output substitutions
substitutions = [('_subject_id_', 'sub-'),
                 ('_task_name_', '/task-'),
                 ('_fwhm_', 'fwhm-'),
                 ('_roi', ''),
                 ('_mcf', ''),
                 ('_st', ''),
                 ('_flirt', ''),
                 ('.nii_mean_reg', '_mean'),
                 ('.nii.par', '.par'),
                 ]
subjFolders = [('fwhm-%s/' % f, 'fwhm-%s_' % f) for f in fwhm]
substitutions.extend(subjFolders)
datasink.inputs.substitutions = substitutions

Specify Workflow

Create a workflow and connect the interface nodes and the I/O stream to each other.

In [ ]:
# Create a preprocessing workflow
preproc = Workflow(name='preproc')
preproc.base_dir = opj(experiment_dir, working_dir)

# Connect all components of the preprocessing workflow
preproc.connect([(infosource, selectfiles, [('subject_id', 'subject_id'),
                                            ('task_name', 'task_name')]),
                 (selectfiles, extract, [('func', 'in_file')]),
                 (extract, mcflirt, [('roi_file', 'in_file')]),
                 (mcflirt, slicetimer, [('out_file', 'in_file')]),

                 (selectfiles, coregwf, [('anat', 'bet_anat.in_file'),
                                         ('anat', 'coreg_bbr.reference')]),
                 (mcflirt, coregwf, [('mean_img', 'coreg_pre.in_file'),
                                     ('mean_img', 'coreg_bbr.in_file'),
                                     ('mean_img', 'applywarp_mean.in_file')]),
                 (slicetimer, coregwf, [('slice_time_corrected_file', 'applywarp.in_file')]),

                 (coregwf, smooth, [('applywarp.out_file', 'in_files')]),

                 (mcflirt, datasink, [('par_file', 'preproc.@par')]),
                 (smooth, datasink, [('smoothed_files', 'preproc.@smooth')]),
                 (coregwf, datasink, [('applywarp_mean.out_file', 'preproc.@mean')]),

                 (coregwf, art, [('applywarp.out_file', 'realigned_files')]),
                 (mcflirt, art, [('par_file', 'realignment_parameters')]),

                 (coregwf, datasink, [('coreg_bbr.out_matrix_file', 'preproc.@mat_file'),
                                      ('bet_anat.out_file', 'preproc.@brain')]),
                 (art, datasink, [('outlier_files', 'preproc.@outlier_files'),
                                  ('plot_files', 'preproc.@plot_files')]),
                 ])

Visualize the workflow

It always helps to visualize your workflow.

In [ ]:
# Create preproc output graph
preproc.write_graph(graph2use='colored', format='png', simple_form=True)

# Visualize the graph
from IPython.display import Image
Image(filename=opj(preproc.base_dir, 'preproc', 'graph.png'))
180514-09:58:05,87 workflow INFO:
	 Generated workflow graph: /output/workingdir/preproc/graph.png (graph2use=colored, simple_form=True).
Out[ ]:
In [ ]:
# Visualize the detailed graph
preproc.write_graph(graph2use='flat', format='png', simple_form=True)
Image(filename=opj(preproc.base_dir, 'preproc', 'graph_detailed.png'))
180514-09:58:05,755 workflow INFO:
	 Generated workflow graph: /output/workingdir/preproc/graph.png (graph2use=flat, simple_form=True).
Out[ ]:

Run the Workflow

Now that everything is ready, we can run the preprocessing workflow. Change n_procs to the number of jobs/cores you want to use. Note that if you're using a Docker container and FLIRT fails to run without any good reason, you might need to change memory settings in the Docker preferences (6 GB should be enough for this workflow).

In [ ]:
preproc.run('MultiProc', plugin_args={'n_procs': 8})
180514-10:24:39,491 workflow INFO:
	 Workflow preproc settings: ['check', 'execution', 'logging', 'monitoring']
180514-10:24:39,630 workflow INFO:
	 Running in parallel.
180514-10:24:39,640 workflow INFO:
	 [MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
180514-10:24:39,704 workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/selectfiles".180514-10:24:39,705 workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/selectfiles".

180514-10:24:39,715 workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")180514-10:24:39,712 workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:24:39,715 workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/selectfiles".

180514-10:24:39,719 workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/selectfiles".
180514-10:24:39,725 workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:24:39,726 workflow INFO:
	 [Node] Finished "preproc.selectfiles".180514-10:24:39,728 workflow INFO:
	 [Node] Finished "preproc.selectfiles".

180514-10:24:39,713 workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/selectfiles".180514-10:24:39,710 workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/selectfiles".180514-10:24:39,728 workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")


180514-10:24:39,707 workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/selectfiles".180514-10:24:39,736 workflow INFO:
	 [Node] Finished "preproc.selectfiles".180514-10:24:39,741 workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")


180514-10:24:39,741 workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")180514-10:24:39,745 workflow INFO:
	 [Node] Finished "preproc.selectfiles".
180514-10:24:39,751 workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:24:39,713 workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/selectfiles".
180514-10:24:39,755 workflow INFO:
	 [Node] Finished "preproc.selectfiles".

180514-10:24:39,761 workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")180514-10:24:39,763 workflow INFO:
	 [Node] Finished "preproc.selectfiles".

180514-10:24:39,771 workflow INFO:
	 [Node] Finished "preproc.selectfiles".
180514-10:24:39,780 workflow INFO:
	 [Node] Finished "preproc.selectfiles".
180514-10:24:41,640 workflow INFO:
	 [Job 0] Completed (preproc.selectfiles).
180514-10:24:41,642 workflow INFO:
	 [Job 16] Completed (preproc.selectfiles).
180514-10:24:41,645 workflow INFO:
	 [Job 32] Completed (preproc.selectfiles).
180514-10:24:41,647 workflow INFO:
	 [Job 48] Completed (preproc.selectfiles).
180514-10:24:41,650 workflow INFO:
	 [Job 64] Completed (preproc.selectfiles).
180514-10:24:41,652 workflow INFO:
	 [Job 80] Completed (preproc.selectfiles).
180514-10:24:41,654 workflow INFO:
	 [Job 96] Completed (preproc.selectfiles).
180514-10:24:41,656 workflow INFO:
	 [Job 112] Completed (preproc.selectfiles).
180514-10:24:41,659 workflow INFO:
	 [MultiProc] Running 0 tasks, and 18 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
180514-10:24:41,706 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/bet_anat".
180514-10:24:41,709 workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/extract".
180514-10:24:41,712 workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-10/anat/sub-10_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/bet_anat/sub-10_t1w_preproc_brain.nii.gz -f 0.50 -R180514-10:24:41,712 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/bet_anat".
180514-10:24:41,719 workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/extract".
180514-10:24:41,720 workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-10/ses-test/func/sub-10_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/extract/sub-10_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
180514-10:24:41,724 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/bet_anat".180514-10:24:41,726 workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/bet_anat/sub-09_t1w_preproc_brain.nii.gz -f 0.50 -R180514-10:24:41,727 workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/extract".

180514-10:24:41,733 workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-09/ses-test/func/sub-09_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/extract/sub-09_ses-test_task-fingerfootlips_bold_roi.nii 4 -1180514-10:24:41,733 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/bet_anat".

180514-10:24:41,734 workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/bet_anat/sub-08_t1w_preproc_brain.nii.gz -f 0.50 -R
180514-10:24:41,740 workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/extract".


180514-10:24:41,746 workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/bet_anat/sub-07_t1w_preproc_brain.nii.gz -f 0.50 -R180514-10:24:41,748 workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-08/ses-test/func/sub-08_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/extract/sub-08_ses-test_task-fingerfootlips_bold_roi.nii 4 -1

180514-10:24:41,761 workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-07/ses-test/func/sub-07_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/extract/sub-07_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
180514-10:24:42,660 workflow INFO:
	 [Node] Finished "preproc.extract".180514-10:24:42,666 workflow INFO:
	 [Node] Finished "preproc.extract".

180514-10:24:42,804 workflow INFO:
	 [Node] Finished "preproc.extract".
180514-10:24:42,846 workflow INFO:
	 [Node] Finished "preproc.extract".
180514-10:24:43,646 workflow INFO:
	 [Job 4] Completed (preproc.extract).
180514-10:24:43,649 workflow INFO:
	 [Job 20] Completed (preproc.extract).
180514-10:24:43,653 workflow INFO:
	 [Job 36] Completed (preproc.extract).
180514-10:24:43,657 workflow INFO:
	 [Job 52] Completed (preproc.extract).
180514-10:24:43,663 workflow INFO:
	 [MultiProc] Running 4 tasks, and 14 jobs ready. Free memory (GB): 53.14/53.94, Free processors: 4/8.
                     Currently running:
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
180514-10:24:43,729 workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt".180514-10:24:43,734 workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt".180514-10:24:43,741 workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt".180514-10:24:43,736 workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt".



180514-10:24:43,762 workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/extract/sub-10_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots180514-10:24:43,763 workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/extract/sub-09_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
180514-10:24:43,768 workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/extract/sub-08_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots180514-10:24:43,774 workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/extract/sub-07_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots


180514-10:24:45,651 workflow INFO:
	 [MultiProc] Running 8 tasks, and 10 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
180514-10:24:54,874 workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
180514-10:24:55,656 workflow INFO:
	 [Job 49] Completed (preproc.coregwf.bet_anat).
180514-10:24:55,687 workflow INFO:
	 [MultiProc] Running 7 tasks, and 11 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
180514-10:24:55,772 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/segmentation".
180514-10:24:55,805 workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/segmentation/sub-07_t1w_preproc_brain.nii.gz
180514-10:24:57,661 workflow INFO:
	 [MultiProc] Running 8 tasks, and 10 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
180514-10:25:03,862 workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
180514-10:25:04,639 workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
180514-10:25:05,89 workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
180514-10:25:05,666 workflow INFO:
	 [Job 1] Completed (preproc.coregwf.bet_anat).
180514-10:25:05,668 workflow INFO:
	 [Job 17] Completed (preproc.coregwf.bet_anat).
180514-10:25:05,672 workflow INFO:
	 [Job 33] Completed (preproc.coregwf.bet_anat).
180514-10:25:05,676 workflow INFO:
	 [MultiProc] Running 5 tasks, and 13 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
180514-10:25:05,736 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/segmentation".180514-10:25:05,739 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/segmentation".
180514-10:25:05,747 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/segmentation".
180514-10:25:05,756 workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/segmentation/sub-10_t1w_preproc_brain.nii.gz180514-10:25:05,763 workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/segmentation/sub-09_t1w_preproc_brain.nii.gz


180514-10:25:05,783 workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/segmentation/sub-08_t1w_preproc_brain.nii.gz
180514-10:25:07,668 workflow INFO:
	 [MultiProc] Running 8 tasks, and 10 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
180514-10:26:43,469 workflow INFO:
	 [Node] Finished "preproc.mcflirt".
180514-10:26:43,762 workflow INFO:
	 [Job 53] Completed (preproc.mcflirt).
180514-10:26:43,780 workflow INFO:
	 [MultiProc] Running 7 tasks, and 12 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
180514-10:26:43,897 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/coreg_pre".
180514-10:26:43,911 workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/bet_anat/sub-07_t1w_preproc_brain.nii.gz -out sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
180514-10:26:45,768 workflow INFO:
	 [MultiProc] Running 8 tasks, and 11 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.mcflirt
180514-10:26:46,443 workflow INFO:
	 [Node] Finished "preproc.mcflirt".
180514-10:26:47,768 workflow INFO:
	 [Job 5] Completed (preproc.mcflirt).
180514-10:26:47,775 workflow INFO:
	 [MultiProc] Running 7 tasks, and 13 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.mcflirt
                       * preproc.mcflirt
180514-10:26:47,903 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/coreg_pre".
180514-10:26:47,933 workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/bet_anat/sub-10_t1w_preproc_brain.nii.gz -out sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
180514-10:26:49,774 workflow INFO:
	 [MultiProc] Running 8 tasks, and 12 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.mcflirt
                       * preproc.mcflirt
180514-10:26:52,387 workflow INFO:
	 [Node] Finished "preproc.mcflirt".
180514-10:26:53,167 workflow INFO:
	 [Node] Finished "preproc.mcflirt".
180514-10:26:53,776 workflow INFO:
	 [Job 21] Completed (preproc.mcflirt).
180514-10:26:53,778 workflow INFO:
	 [Job 37] Completed (preproc.mcflirt).
180514-10:26:53,783 workflow INFO:
	 [MultiProc] Running 6 tasks, and 16 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
                     Currently running:
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:26:53,875 workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/slicetimer".180514-10:26:53,878 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/coreg_pre".

180514-10:26:53,886 workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/slicetimer/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000180514-10:26:53,908 workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/bet_anat/sub-09_t1w_preproc_brain.nii.gz -out sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6

180514-10:26:55,780 workflow INFO:
	 [MultiProc] Running 8 tasks, and 14 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.coreg_pre
                       * preproc.slicetimer
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:26:56,766 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
180514-10:26:57,780 workflow INFO:
	 [Job 54] Completed (preproc.coregwf.coreg_pre).
180514-10:26:57,805 workflow INFO:
	 [MultiProc] Running 7 tasks, and 14 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_pre
                       * preproc.slicetimer
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:26:57,869 workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/slicetimer".
180514-10:26:57,901 workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/slicetimer/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
180514-10:26:59,786 workflow INFO:
	 [MultiProc] Running 8 tasks, and 13 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.slicetimer
                       * preproc.coregwf.coreg_pre
                       * preproc.slicetimer
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:00,630 workflow INFO:
	 [Node] Finished "preproc.slicetimer".
180514-10:27:01,787 workflow INFO:
	 [Job 9] Completed (preproc.slicetimer).
180514-10:27:01,798 workflow INFO:
	 [MultiProc] Running 7 tasks, and 13 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.slicetimer
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:01,867 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/coreg_pre".
180514-10:27:01,910 workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/bet_anat/sub-08_t1w_preproc_brain.nii.gz -out sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
180514-10:27:03,351 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
180514-10:27:03,790 workflow INFO:
	 [Job 6] Completed (preproc.coregwf.coreg_pre).
180514-10:27:03,816 workflow INFO:
	 [MultiProc] Running 7 tasks, and 12 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_pre
                       * preproc.slicetimer
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:03,966 workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/slicetimer".
180514-10:27:04,605 workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/slicetimer/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
180514-10:27:05,373 workflow INFO:
	 [Node] Finished "preproc.slicetimer".
180514-10:27:05,794 workflow INFO:
	 [Job 25] Completed (preproc.slicetimer).
180514-10:27:05,814 workflow INFO:
	 [MultiProc] Running 7 tasks, and 11 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.slicetimer
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:05,902 workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/slicetimer".
180514-10:27:05,923 workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/slicetimer/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
180514-10:27:07,797 workflow INFO:
	 [MultiProc] Running 8 tasks, and 10 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.slicetimer
                       * preproc.slicetimer
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:10,182 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
180514-10:27:11,798 workflow INFO:
	 [Job 22] Completed (preproc.coregwf.coreg_pre).
180514-10:27:11,823 workflow INFO:
	 [MultiProc] Running 7 tasks, and 10 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.slicetimer
                       * preproc.slicetimer
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:11,913 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/bet_anat".
180514-10:27:11,940 workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-06/anat/sub-06_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/bet_anat/sub-06_t1w_preproc_brain.nii.gz -f 0.50 -R
180514-10:27:12,283 workflow INFO:
	 [Node] Finished "preproc.slicetimer".
180514-10:27:13,100 workflow INFO:
	 [Node] Finished "preproc.slicetimer".
180514-10:27:13,802 workflow INFO:
	 [Job 41] Completed (preproc.slicetimer).
180514-10:27:13,803 workflow INFO:
	 [Job 57] Completed (preproc.slicetimer).
180514-10:27:13,810 workflow INFO:
	 [MultiProc] Running 6 tasks, and 9 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
                     Currently running:
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:13,863 workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/extract".180514-10:27:13,865 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/bet_anat".

180514-10:27:13,901 workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/bet_anat/sub-05_t1w_preproc_brain.nii.gz -f 0.50 -R180514-10:27:13,892 workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-06/ses-test/func/sub-06_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/extract/sub-06_ses-test_task-fingerfootlips_bold_roi.nii 4 -1

180514-10:27:14,760 workflow INFO:
	 [Node] Finished "preproc.extract".
180514-10:27:15,806 workflow INFO:
	 [Job 68] Completed (preproc.extract).
180514-10:27:15,814 workflow INFO:
	 [MultiProc] Running 7 tasks, and 8 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:15,885 workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt".
180514-10:27:15,913 workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/extract/sub-06_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
180514-10:27:17,811 workflow INFO:
	 [MultiProc] Running 8 tasks, and 7 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.mcflirt
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:18,420 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
180514-10:27:19,812 workflow INFO:
	 [Job 38] Completed (preproc.coregwf.coreg_pre).
180514-10:27:19,819 workflow INFO:
	 [MultiProc] Running 7 tasks, and 7 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.mcflirt
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:19,882 workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/extract".
180514-10:27:19,936 workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-05/ses-test/func/sub-05_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/extract/sub-05_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
180514-10:27:21,261 workflow INFO:
	 [Node] Finished "preproc.extract".
180514-10:27:21,816 workflow INFO:
	 [Job 84] Completed (preproc.extract).
180514-10:27:21,831 workflow INFO:
	 [MultiProc] Running 7 tasks, and 7 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.mcflirt
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:21,929 workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt".
180514-10:27:21,945 workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/extract/sub-05_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
180514-10:27:23,822 workflow INFO:
	 [MultiProc] Running 8 tasks, and 6 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:29,425 workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
180514-10:27:29,830 workflow INFO:
	 [Job 81] Completed (preproc.coregwf.bet_anat).
180514-10:27:29,839 workflow INFO:
	 [MultiProc] Running 7 tasks, and 7 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:29,903 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/segmentation".
180514-10:27:29,921 workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/segmentation/sub-05_t1w_preproc_brain.nii.gz
180514-10:27:30,25 workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
180514-10:27:31,834 workflow INFO:
	 [Job 65] Completed (preproc.coregwf.bet_anat).
180514-10:27:31,877 workflow INFO:
	 [MultiProc] Running 7 tasks, and 7 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:27:31,995 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/segmentation".
180514-10:27:32,18 workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/segmentation/sub-06_t1w_preproc_brain.nii.gz
180514-10:27:33,840 workflow INFO:
	 [MultiProc] Running 8 tasks, and 6 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.mcflirt
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:29:26,871 workflow INFO:
	 [Node] Finished "preproc.mcflirt".
180514-10:29:27,956 workflow INFO:
	 [Job 85] Completed (preproc.mcflirt).
180514-10:29:27,964 workflow INFO:
	 [MultiProc] Running 7 tasks, and 8 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:29:28,64 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/coreg_pre".
180514-10:29:28,106 workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/bet_anat/sub-05_t1w_preproc_brain.nii.gz -out sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
180514-10:29:28,686 workflow INFO:
	 [Node] Finished "preproc.mcflirt".
180514-10:29:29,961 workflow INFO:
	 [Job 69] Completed (preproc.mcflirt).
180514-10:29:29,969 workflow INFO:
	 [MultiProc] Running 7 tasks, and 9 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:29:30,64 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/coreg_pre".
180514-10:29:30,97 workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/bet_anat/sub-06_t1w_preproc_brain.nii.gz -out sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
180514-10:29:31,966 workflow INFO:
	 [MultiProc] Running 8 tasks, and 8 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:29:43,797 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
180514-10:29:43,976 workflow INFO:
	 [Job 86] Completed (preproc.coregwf.coreg_pre).
180514-10:29:44,2 workflow INFO:
	 [MultiProc] Running 7 tasks, and 8 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:29:44,73 workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/slicetimer".
180514-10:29:44,114 workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/slicetimer/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
180514-10:29:45,980 workflow INFO:
	 [MultiProc] Running 8 tasks, and 7 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.slicetimer
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:29:46,296 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
180514-10:29:47,980 workflow INFO:
	 [Job 70] Completed (preproc.coregwf.coreg_pre).
180514-10:29:47,986 workflow INFO:
	 [MultiProc] Running 7 tasks, and 7 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.slicetimer
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:29:48,61 workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/slicetimer".
180514-10:29:48,80 workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/slicetimer/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
180514-10:29:49,984 workflow INFO:
	 [MultiProc] Running 8 tasks, and 6 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.slicetimer
                       * preproc.slicetimer
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:29:51,106 workflow INFO:
	 [Node] Finished "preproc.slicetimer".
180514-10:29:51,984 workflow INFO:
	 [Job 73] Completed (preproc.slicetimer).
180514-10:29:51,990 workflow INFO:
	 [MultiProc] Running 7 tasks, and 6 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.slicetimer
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:29:52,94 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/bet_anat".
180514-10:29:52,139 workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/bet_anat/sub-04_t1w_preproc_brain.nii.gz -f 0.50 -R
180514-10:29:53,988 workflow INFO:
	 [MultiProc] Running 8 tasks, and 5 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.bet_anat
                       * preproc.slicetimer
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:29:56,380 workflow INFO:
	 [Node] Finished "preproc.slicetimer".
180514-10:29:57,990 workflow INFO:
	 [Job 89] Completed (preproc.slicetimer).
180514-10:29:58,0 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:29:58,72 workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/extract".
180514-10:29:58,112 workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-04/ses-test/func/sub-04_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/extract/sub-04_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
180514-10:29:58,930 workflow INFO:
	 [Node] Finished "preproc.extract".
180514-10:29:59,997 workflow INFO:
	 [Job 100] Completed (preproc.extract).
180514-10:30:00,6 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:30:00,111 workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt".
180514-10:30:00,137 workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/extract/sub-04_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
180514-10:30:02,1 workflow INFO:
	 [MultiProc] Running 8 tasks, and 4 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.mcflirt
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:30:09,144 workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
180514-10:30:10,9 workflow INFO:
	 [Job 2] Completed (preproc.coregwf.segmentation).
180514-10:30:10,23 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.mcflirt
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:30:10,106 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/threshold".
180514-10:30:10,147 workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/segmentation/sub-10_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/threshold/sub-10_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:30:11,390 workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
180514-10:30:11,468 workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
180514-10:30:12,13 workflow INFO:
	 [Job 97] Completed (preproc.coregwf.bet_anat).
180514-10:30:12,19 workflow INFO:
	 [Job 3] Completed (preproc.coregwf.threshold).
180514-10:30:12,27 workflow INFO:
	 [MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
                     Currently running:
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:30:12,124 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/coreg_bbr".180514-10:30:12,126 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/segmentation".

180514-10:30:12,164 workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/segmentation/sub-04_t1w_preproc_brain.nii.gz180514-10:30:12,175 workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-10/anat/sub-10_t1w_preproc.nii.gz -out sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/coreg_pre/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/threshold/sub-10_t1w_preproc_brain_pve_2_thresh.nii.gz

180514-10:30:14,16 workflow INFO:
	 [MultiProc] Running 8 tasks, and 4 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:30:15,693 workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
180514-10:30:16,19 workflow INFO:
	 [Job 18] Completed (preproc.coregwf.segmentation).
180514-10:30:16,32 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:30:16,27 workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
180514-10:30:16,102 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/threshold".
180514-10:30:16,126 workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/segmentation/sub-09_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/threshold/sub-09_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:30:17,103 workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
180514-10:30:18,21 workflow INFO:
	 [Job 50] Completed (preproc.coregwf.segmentation).
180514-10:30:18,24 workflow INFO:
	 [Job 19] Completed (preproc.coregwf.threshold).
180514-10:30:18,28 workflow INFO:
	 [MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:30:18,95 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/coreg_bbr".
180514-10:30:18,106 workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_preproc.nii.gz -out sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/coreg_pre/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/threshold/sub-09_t1w_preproc_brain_pve_2_thresh.nii.gz180514-10:30:18,103 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/threshold".

180514-10:30:18,140 workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/segmentation/sub-07_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/threshold/sub-07_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:30:19,370 workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
180514-10:30:20,21 workflow INFO:
	 [Job 51] Completed (preproc.coregwf.threshold).
180514-10:30:20,46 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:30:20,143 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/coreg_bbr".
180514-10:30:20,181 workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_preproc.nii.gz -out sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/coreg_pre/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/threshold/sub-07_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:30:22,26 workflow INFO:
	 [MultiProc] Running 8 tasks, and 4 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:30:42,465 workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
180514-10:30:44,50 workflow INFO:
	 [Job 34] Completed (preproc.coregwf.segmentation).
180514-10:30:44,84 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:30:44,166 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/threshold".
180514-10:30:44,195 workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/segmentation/sub-08_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/threshold/sub-08_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:30:45,575 workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
180514-10:30:46,54 workflow INFO:
	 [Job 35] Completed (preproc.coregwf.threshold).
180514-10:30:46,88 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:30:46,234 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/coreg_bbr".
180514-10:30:46,264 workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_preproc.nii.gz -out sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/coreg_pre/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/threshold/sub-08_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:30:48,61 workflow INFO:
	 [MultiProc] Running 8 tasks, and 4 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.mcflirt
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:32:00,183 workflow INFO:
	 [Node] Finished "preproc.mcflirt".
180514-10:32:02,170 workflow INFO:
	 [Job 101] Completed (preproc.mcflirt).
180514-10:32:02,190 workflow INFO:
	 [MultiProc] Running 7 tasks, and 6 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:32:02,281 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/coreg_pre".
180514-10:32:02,326 workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/bet_anat/sub-04_t1w_preproc_brain.nii.gz -out sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
180514-10:32:04,176 workflow INFO:
	 [MultiProc] Running 8 tasks, and 5 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.coreg_pre
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:32:19,699 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
180514-10:32:20,190 workflow INFO:
	 [Job 102] Completed (preproc.coregwf.coreg_pre).
180514-10:32:20,195 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:32:20,248 workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/slicetimer".
180514-10:32:20,291 workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/slicetimer/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
180514-10:32:22,196 workflow INFO:
	 [MultiProc] Running 8 tasks, and 4 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.slicetimer
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:32:28,422 workflow INFO:
	 [Node] Finished "preproc.slicetimer".
180514-10:32:30,200 workflow INFO:
	 [Job 105] Completed (preproc.slicetimer).
180514-10:32:30,220 workflow INFO:
	 [MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:32:30,282 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/bet_anat".
180514-10:32:30,322 workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/bet_anat/sub-03_t1w_preproc_brain.nii.gz -f 0.50 -R
180514-10:32:32,205 workflow INFO:
	 [MultiProc] Running 8 tasks, and 3 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.segmentation
180514-10:32:47,9 workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
180514-10:32:48,218 workflow INFO:
	 [Job 66] Completed (preproc.coregwf.segmentation).
180514-10:32:48,225 workflow INFO:
	 [MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:32:48,278 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/threshold".
180514-10:32:48,319 workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/segmentation/sub-06_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/threshold/sub-06_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:32:49,634 workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
180514-10:32:50,222 workflow INFO:
	 [Job 67] Completed (preproc.coregwf.threshold).
180514-10:32:50,226 workflow INFO:
	 [MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:32:50,325 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/coreg_bbr".
180514-10:32:50,358 workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-06/anat/sub-06_t1w_preproc.nii.gz -out sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/coreg_pre/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/threshold/sub-06_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:32:52,228 workflow INFO:
	 [MultiProc] Running 8 tasks, and 3 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.bet_anat
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:32:56,589 workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
180514-10:32:58,232 workflow INFO:
	 [Job 113] Completed (preproc.coregwf.bet_anat).
180514-10:32:58,238 workflow INFO:
	 [MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:32:58,310 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/segmentation".
180514-10:32:58,340 workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/segmentation/sub-03_t1w_preproc_brain.nii.gz
180514-10:33:00,238 workflow INFO:
	 [MultiProc] Running 8 tasks, and 3 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:33:14,974 workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
180514-10:33:16,266 workflow INFO:
	 [Job 82] Completed (preproc.coregwf.segmentation).
180514-10:33:16,273 workflow INFO:
	 [MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
180514-10:33:16,342 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/threshold".
180514-10:33:16,394 workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/segmentation/sub-05_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/threshold/sub-05_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:33:17,701 workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
180514-10:33:18,270 workflow INFO:
	 [Job 83] Completed (preproc.coregwf.threshold).
180514-10:33:18,307 workflow INFO:
	 [MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
180514-10:33:18,390 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/coreg_bbr".
180514-10:33:18,431 workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_preproc.nii.gz -out sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/coreg_pre/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/threshold/sub-05_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:33:20,276 workflow INFO:
	 [MultiProc] Running 8 tasks, and 3 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
180514-10:34:03,81 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
180514-10:34:03,445 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
180514-10:34:04,318 workflow INFO:
	 [Job 7] Completed (preproc.coregwf.coreg_bbr).
180514-10:34:04,320 workflow INFO:
	 [Job 55] Completed (preproc.coregwf.coreg_bbr).
180514-10:34:04,325 workflow INFO:
	 [MultiProc] Running 6 tasks, and 7 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:04,375 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/applywarp_mean".
180514-10:34:04,381 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/applywarp".180514-10:34:04,391 workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/bet_anat/sub-10_t1w_preproc_brain.nii.gz -out sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/coreg_bbr/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline

180514-10:34:04,403 workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/slicetimer/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/bet_anat/sub-10_t1w_preproc_brain.nii.gz -out sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/coreg_bbr/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
180514-10:34:06,324 workflow INFO:
	 [MultiProc] Running 8 tasks, and 5 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.applywarp
                       * preproc.coregwf.applywarp_mean
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:07,474 workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
180514-10:34:08,324 workflow INFO:
	 [Job 8] Completed (preproc.coregwf.applywarp_mean).
180514-10:34:08,347 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.applywarp
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:08,421 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/applywarp_mean".
180514-10:34:08,465 workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/bet_anat/sub-07_t1w_preproc_brain.nii.gz -out sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/coreg_bbr/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
180514-10:34:10,330 workflow INFO:
	 [MultiProc] Running 8 tasks, and 4 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.applywarp_mean
                       * preproc.coregwf.applywarp
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:11,607 workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
180514-10:34:12,330 workflow INFO:
	 [Job 56] Completed (preproc.coregwf.applywarp_mean).
180514-10:34:12,359 workflow INFO:
	 [MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.applywarp
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:12,423 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/applywarp".
180514-10:34:12,453 workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/slicetimer/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/bet_anat/sub-07_t1w_preproc_brain.nii.gz -out sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/coreg_bbr/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
180514-10:34:14,336 workflow INFO:
	 [MultiProc] Running 8 tasks, and 3 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.applywarp
                       * preproc.coregwf.applywarp
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:22,151 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
180514-10:34:22,342 workflow INFO:
	 [Job 23] Completed (preproc.coregwf.coreg_bbr).
180514-10:34:22,356 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.applywarp
                       * preproc.coregwf.applywarp
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:22,434 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/applywarp_mean".
180514-10:34:22,462 workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/bet_anat/sub-09_t1w_preproc_brain.nii.gz -out sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/coreg_bbr/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
180514-10:34:23,71 workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
180514-10:34:24,346 workflow INFO:
	 [Job 10] Completed (preproc.coregwf.applywarp).
180514-10:34:24,374 workflow INFO:
	 [MultiProc] Running 7 tasks, and 7 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.applywarp_mean
                       * preproc.coregwf.applywarp
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:24,440 workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_8/smooth".
180514-10:34:24,469 workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
180514-10:34:25,634 workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
180514-10:34:26,350 workflow INFO:
	 [Job 24] Completed (preproc.coregwf.applywarp_mean).
180514-10:34:26,368 workflow INFO:
	 [MultiProc] Running 7 tasks, and 6 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.coregwf.applywarp
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:26,436 workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_4/smooth".
180514-10:34:26,458 workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
180514-10:34:28,356 workflow INFO:
	 [MultiProc] Running 8 tasks, and 5 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.applywarp
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:31,120 workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
180514-10:34:32,358 workflow INFO:
	 [Job 58] Completed (preproc.coregwf.applywarp).
180514-10:34:32,362 workflow INFO:
	 [MultiProc] Running 7 tasks, and 8 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:32,423 workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/art".
180514-10:34:32,441 workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
/opt/conda/envs/neuro/lib/python3.6/site-packages/nipype/algorithms/rapidart.py:542: UserWarning:
This call to matplotlib.use() has no effect because the backend has already
been chosen; matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.

The backend was *originally* set to 'module://ipykernel.pylab.backend_inline' by the following code:
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 193, in _run_module_as_main
    "__main__", mod_spec)
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 85, in _run_code
    exec(code, run_globals)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/__main__.py", line 3, in <module>
    app.launch_new_instance()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/traitlets/config/application.py", line 658, in launch_instance
    app.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelapp.py", line 486, in start
    self.io_loop.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 127, in start
    self.asyncio_loop.run_forever()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 422, in run_forever
    self._run_once()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 1432, in _run_once
    handle._run()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/events.py", line 145, in _run
    self._callback(*self._args)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 117, in _handle_events
    handler_func(fileobj, events)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 450, in _handle_events
    self._handle_recv()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 480, in _handle_recv
    self._run_callback(callback, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 432, in _run_callback
    callback(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 283, in dispatcher
    return self.dispatch_shell(stream, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 233, in dispatch_shell
    handler(stream, idents, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 399, in execute_request
    user_expressions, allow_stdin)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/ipkernel.py", line 208, in do_execute
    res = shell.run_cell(code, store_history=store_history, silent=silent)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/zmqshell.py", line 537, in run_cell
    return super(ZMQInteractiveShell, self).run_cell(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/interactiveshell.py", line 2666, in run_cell
    self.events.trigger('post_run_cell', result)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/events.py", line 88, in trigger
    func(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/pylab/backend_inline.py", line 160, in configure_once
    activate_matplotlib(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/pylabtools.py", line 311, in activate_matplotlib
    matplotlib.pyplot.switch_backend(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/pyplot.py", line 231, in switch_backend
    matplotlib.use(newbackend, warn=False, force=True)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/__init__.py", line 1410, in use
    reload(sys.modules['matplotlib.backends'])
  File "/opt/conda/envs/neuro/lib/python3.6/importlib/__init__.py", line 166, in reload
    _bootstrap._exec(spec, module)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/backends/__init__.py", line 16, in <module>
    line for line in traceback.format_stack()


  matplotlib.use(config.get("execution", "matplotlib_backend"))
/opt/conda/envs/neuro/lib/python3.6/site-packages/nipype/algorithms/rapidart.py:398: UserWarning:
This call to matplotlib.use() has no effect because the backend has already
been chosen; matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.

The backend was *originally* set to 'module://ipykernel.pylab.backend_inline' by the following code:
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 193, in _run_module_as_main
    "__main__", mod_spec)
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 85, in _run_code
    exec(code, run_globals)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/__main__.py", line 3, in <module>
    app.launch_new_instance()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/traitlets/config/application.py", line 658, in launch_instance
    app.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelapp.py", line 486, in start
    self.io_loop.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 127, in start
    self.asyncio_loop.run_forever()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 422, in run_forever
    self._run_once()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 1432, in _run_once
    handle._run()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/events.py", line 145, in _run
    self._callback(*self._args)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 117, in _handle_events
    handler_func(fileobj, events)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 450, in _handle_events
    self._handle_recv()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 480, in _handle_recv
    self._run_callback(callback, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 432, in _run_callback
    callback(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 283, in dispatcher
    return self.dispatch_shell(stream, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 233, in dispatch_shell
    handler(stream, idents, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 399, in execute_request
    user_expressions, allow_stdin)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/ipkernel.py", line 208, in do_execute
    res = shell.run_cell(code, store_history=store_history, silent=silent)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/zmqshell.py", line 537, in run_cell
    return super(ZMQInteractiveShell, self).run_cell(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/interactiveshell.py", line 2666, in run_cell
    self.events.trigger('post_run_cell', result)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/events.py", line 88, in trigger
    func(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/pylab/backend_inline.py", line 160, in configure_once
    activate_matplotlib(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/pylabtools.py", line 311, in activate_matplotlib
    matplotlib.pyplot.switch_backend(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/pyplot.py", line 231, in switch_backend
    matplotlib.use(newbackend, warn=False, force=True)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/__init__.py", line 1410, in use
    reload(sys.modules['matplotlib.backends'])
  File "/opt/conda/envs/neuro/lib/python3.6/importlib/__init__.py", line 166, in reload
    _bootstrap._exec(spec, module)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/backends/__init__.py", line 16, in <module>
    line for line in traceback.format_stack()


  matplotlib.use(config.get("execution", "matplotlib_backend"))
180514-10:34:33,116 workflow INFO:
	 [Node] Finished "preproc.art".
180514-10:34:34,362 workflow INFO:
	 [Job 13] Completed (preproc.art).
180514-10:34:34,380 workflow INFO:
	 [MultiProc] Running 7 tasks, and 7 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:34,455 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/applywarp".
180514-10:34:34,493 workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/slicetimer/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/bet_anat/sub-09_t1w_preproc_brain.nii.gz -out sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/coreg_bbr/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
180514-10:34:36,368 workflow INFO:
	 [MultiProc] Running 8 tasks, and 6 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.applywarp
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:52,309 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
180514-10:34:52,382 workflow INFO:
	 [Job 39] Completed (preproc.coregwf.coreg_bbr).
180514-10:34:52,386 workflow INFO:
	 [MultiProc] Running 7 tasks, and 8 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.applywarp
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:52,449 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/applywarp_mean".
180514-10:34:52,487 workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/bet_anat/sub-08_t1w_preproc_brain.nii.gz -out sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/coreg_bbr/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
180514-10:34:53,576 workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
180514-10:34:54,386 workflow INFO:
	 [Job 26] Completed (preproc.coregwf.applywarp).
180514-10:34:54,390 workflow INFO:
	 [MultiProc] Running 7 tasks, and 10 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.applywarp_mean
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:54,482 workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_8/smooth".
180514-10:34:54,511 workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
180514-10:34:55,220 workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
180514-10:34:56,390 workflow INFO:
	 [Job 40] Completed (preproc.coregwf.applywarp_mean).
180514-10:34:56,408 workflow INFO:
	 [MultiProc] Running 7 tasks, and 9 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:34:56,471 workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_4/smooth".
180514-10:34:56,507 workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
180514-10:34:58,396 workflow INFO:
	 [MultiProc] Running 8 tasks, and 8 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:35:14,554 workflow INFO:
	 [Node] Finished "preproc.smooth".
180514-10:35:15,896 workflow INFO:
	 [Node] Finished "preproc.smooth".
180514-10:35:16,412 workflow INFO:
	 [Job 11] Completed (preproc.smooth).
180514-10:35:16,415 workflow INFO:
	 [Job 12] Completed (preproc.smooth).
180514-10:35:16,443 workflow INFO:
	 [MultiProc] Running 6 tasks, and 10 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:35:16,518 workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_8/datasink".
180514-10:35:16,532 workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")180514-10:35:16,543 workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_4/datasink".

180514-10:35:16,563 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_t1w_preproc_brain.nii.gz180514-10:35:16,575 workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")

180514-10:35:16,603 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/art.sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-10/task-fingerfootlips/art.sub-10_ses-test_task-fingerfootlips_bold_outliers.txt180514-10:35:16,608 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_4/ssub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-10/task-fingerfootlips/fwhm-4_ssub-10_ses-test_task-fingerfootlips_bold.nii

180514-10:35:16,631 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/plot.sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-10/task-fingerfootlips/plot.sub-10_ses-test_task-fingerfootlips_bold.svg
180514-10:35:16,638 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_t1w_preproc_brain.nii.gz180514-10:35:16,657 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_mean.nii.gz
180514-10:35:16,674 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/art.sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-10/task-fingerfootlips/art.sub-10_ses-test_task-fingerfootlips_bold_outliers.txt

180514-10:35:16,694 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold.par180514-10:35:16,698 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/plot.sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-10/task-fingerfootlips/plot.sub-10_ses-test_task-fingerfootlips_bold.svg

180514-10:35:16,716 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_8/ssub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-10/task-fingerfootlips/fwhm-8_ssub-10_ses-test_task-fingerfootlips_bold.nii
180514-10:35:16,713 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_mean.nii.gz
180514-10:35:16,732 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_mean.mat
180514-10:35:16,739 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold.par
180514-10:35:16,758 workflow INFO:
	 [Node] Finished "preproc.datasink".
180514-10:35:16,765 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_mean.mat
180514-10:35:16,782 workflow INFO:
	 [Node] Finished "preproc.datasink".
180514-10:35:18,418 workflow INFO:
	 [Job 14] Completed (preproc.datasink).
180514-10:35:18,420 workflow INFO:
	 [Job 15] Completed (preproc.datasink).
180514-10:35:18,425 workflow INFO:
	 [MultiProc] Running 6 tasks, and 8 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:35:18,491 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/applywarp".180514-10:35:18,486 workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/art".
180514-10:35:18,516 workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/slicetimer/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/bet_anat/sub-08_t1w_preproc_brain.nii.gz -out sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/coreg_bbr/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline

180514-10:35:18,552 workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
/opt/conda/envs/neuro/lib/python3.6/site-packages/nipype/algorithms/rapidart.py:542: UserWarning:
This call to matplotlib.use() has no effect because the backend has already
been chosen; matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.

The backend was *originally* set to 'module://ipykernel.pylab.backend_inline' by the following code:
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 193, in _run_module_as_main
    "__main__", mod_spec)
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 85, in _run_code
    exec(code, run_globals)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/__main__.py", line 3, in <module>
    app.launch_new_instance()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/traitlets/config/application.py", line 658, in launch_instance
    app.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelapp.py", line 486, in start
    self.io_loop.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 127, in start
    self.asyncio_loop.run_forever()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 422, in run_forever
    self._run_once()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 1432, in _run_once
    handle._run()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/events.py", line 145, in _run
    self._callback(*self._args)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 117, in _handle_events
    handler_func(fileobj, events)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 450, in _handle_events
    self._handle_recv()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 480, in _handle_recv
    self._run_callback(callback, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 432, in _run_callback
    callback(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 283, in dispatcher
    return self.dispatch_shell(stream, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 233, in dispatch_shell
    handler(stream, idents, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 399, in execute_request
    user_expressions, allow_stdin)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/ipkernel.py", line 208, in do_execute
    res = shell.run_cell(code, store_history=store_history, silent=silent)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/zmqshell.py", line 537, in run_cell
    return super(ZMQInteractiveShell, self).run_cell(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/interactiveshell.py", line 2666, in run_cell
    self.events.trigger('post_run_cell', result)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/events.py", line 88, in trigger
    func(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/pylab/backend_inline.py", line 160, in configure_once
    activate_matplotlib(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/pylabtools.py", line 311, in activate_matplotlib
    matplotlib.pyplot.switch_backend(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/pyplot.py", line 231, in switch_backend
    matplotlib.use(newbackend, warn=False, force=True)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/__init__.py", line 1410, in use
    reload(sys.modules['matplotlib.backends'])
  File "/opt/conda/envs/neuro/lib/python3.6/importlib/__init__.py", line 166, in reload
    _bootstrap._exec(spec, module)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/backends/__init__.py", line 16, in <module>
    line for line in traceback.format_stack()


  matplotlib.use(config.get("execution", "matplotlib_backend"))
/opt/conda/envs/neuro/lib/python3.6/site-packages/nipype/algorithms/rapidart.py:398: UserWarning:
This call to matplotlib.use() has no effect because the backend has already
been chosen; matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.

The backend was *originally* set to 'module://ipykernel.pylab.backend_inline' by the following code:
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 193, in _run_module_as_main
    "__main__", mod_spec)
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 85, in _run_code
    exec(code, run_globals)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/__main__.py", line 3, in <module>
    app.launch_new_instance()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/traitlets/config/application.py", line 658, in launch_instance
    app.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelapp.py", line 486, in start
    self.io_loop.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 127, in start
    self.asyncio_loop.run_forever()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 422, in run_forever
    self._run_once()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 1432, in _run_once
    handle._run()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/events.py", line 145, in _run
    self._callback(*self._args)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 117, in _handle_events
    handler_func(fileobj, events)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 450, in _handle_events
    self._handle_recv()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 480, in _handle_recv
    self._run_callback(callback, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 432, in _run_callback
    callback(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 283, in dispatcher
    return self.dispatch_shell(stream, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 233, in dispatch_shell
    handler(stream, idents, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 399, in execute_request
    user_expressions, allow_stdin)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/ipkernel.py", line 208, in do_execute
    res = shell.run_cell(code, store_history=store_history, silent=silent)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/zmqshell.py", line 537, in run_cell
    return super(ZMQInteractiveShell, self).run_cell(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/interactiveshell.py", line 2666, in run_cell
    self.events.trigger('post_run_cell', result)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/events.py", line 88, in trigger
    func(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/pylab/backend_inline.py", line 160, in configure_once
    activate_matplotlib(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/pylabtools.py", line 311, in activate_matplotlib
    matplotlib.pyplot.switch_backend(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/pyplot.py", line 231, in switch_backend
    matplotlib.use(newbackend, warn=False, force=True)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/__init__.py", line 1410, in use
    reload(sys.modules['matplotlib.backends'])
  File "/opt/conda/envs/neuro/lib/python3.6/importlib/__init__.py", line 166, in reload
    _bootstrap._exec(spec, module)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/backends/__init__.py", line 16, in <module>
    line for line in traceback.format_stack()


  matplotlib.use(config.get("execution", "matplotlib_backend"))
180514-10:35:19,457 workflow INFO:
	 [Node] Finished "preproc.art".
180514-10:35:20,423 workflow INFO:
	 [Job 29] Completed (preproc.art).
180514-10:35:20,432 workflow INFO:
	 [MultiProc] Running 7 tasks, and 6 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.applywarp
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:35:20,528 workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/_fwhm_8/smooth".
180514-10:35:20,590 workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
180514-10:35:22,428 workflow INFO:
	 [MultiProc] Running 8 tasks, and 5 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.coregwf.applywarp
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:35:36,15 workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
180514-10:35:36,440 workflow INFO:
	 [Job 98] Completed (preproc.coregwf.segmentation).
180514-10:35:36,449 workflow INFO:
	 [MultiProc] Running 7 tasks, and 6 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.coregwf.applywarp
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
180514-10:35:36,505 workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/_fwhm_4/smooth".
180514-10:35:36,557 workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
180514-10:35:37,149 workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
180514-10:35:38,443 workflow INFO:
	 [Job 42] Completed (preproc.coregwf.applywarp).
180514-10:35:38,451 workflow INFO:
	 [MultiProc] Running 7 tasks, and 8 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
180514-10:35:38,547 workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/_fwhm_8/smooth".
180514-10:35:38,566 workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
180514-10:35:40,451 workflow INFO:
	 [MultiProc] Running 8 tasks, and 7 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
180514-10:35:46,265 workflow INFO:
	 [Node] Finished "preproc.smooth".
180514-10:35:46,454 workflow INFO:
	 [Job 27] Completed (preproc.smooth).
180514-10:35:46,459 workflow INFO:
	 [MultiProc] Running 7 tasks, and 8 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
180514-10:35:46,542 workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_8/datasink".
180514-10:35:46,581 workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:35:46,611 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_t1w_preproc_brain.nii.gz
180514-10:35:46,629 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/art.sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-09/task-fingerfootlips/art.sub-09_ses-test_task-fingerfootlips_bold_outliers.txt
180514-10:35:46,661 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/plot.sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-09/task-fingerfootlips/plot.sub-09_ses-test_task-fingerfootlips_bold.svg
180514-10:35:46,679 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_mean.nii.gz
180514-10:35:46,691 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold.par
180514-10:35:46,717 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_8/ssub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-09/task-fingerfootlips/fwhm-8_ssub-09_ses-test_task-fingerfootlips_bold.nii
180514-10:35:46,746 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_mean.mat
180514-10:35:46,790 workflow INFO:
	 [Node] Finished "preproc.datasink".
180514-10:35:47,489 workflow INFO:
	 [Node] Finished "preproc.smooth".
180514-10:35:48,458 workflow INFO:
	 [Job 28] Completed (preproc.smooth).
180514-10:35:48,460 workflow INFO:
	 [Job 30] Completed (preproc.datasink).
180514-10:35:48,465 workflow INFO:
	 [MultiProc] Running 6 tasks, and 8 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr
180514-10:35:48,533 workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_4/datasink".180514-10:35:48,538 workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/_fwhm_4/smooth".

180514-10:35:48,563 workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")180514-10:35:48,575 workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")

180514-10:35:48,594 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_4/ssub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-09/task-fingerfootlips/fwhm-4_ssub-09_ses-test_task-fingerfootlips_bold.nii
180514-10:35:48,628 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_t1w_preproc_brain.nii.gz
180514-10:35:48,655 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/art.sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-09/task-fingerfootlips/art.sub-09_ses-test_task-fingerfootlips_bold_outliers.txt
180514-10:35:48,698 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/plot.sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-09/task-fingerfootlips/plot.sub-09_ses-test_task-fingerfootlips_bold.svg
180514-10:35:48,716 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_mean.nii.gz
180514-10:35:48,739 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold.par
180514-10:35:48,769 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_mean.mat
180514-10:35:48,791 workflow INFO:
	 [Node] Finished "preproc.datasink".
180514-10:35:50,463 workflow INFO:
	 [Job 31] Completed (preproc.datasink).
180514-10:35:50,465 workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".180514-10:35:50,468 workflow INFO:
	 [MultiProc] Running 7 tasks, and 6 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
                       * preproc.coregwf.coreg_bbr

180514-10:35:50,537 workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/art".
180514-10:35:50,571 workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
180514-10:35:51,229 workflow INFO:
	 [Node] Finished "preproc.art".
180514-10:35:52,468 workflow INFO:
	 [Job 71] Completed (preproc.coregwf.coreg_bbr).
180514-10:35:52,491 workflow INFO:
	 [Job 45] Completed (preproc.art).
180514-10:35:52,501 workflow INFO:
	 [MultiProc] Running 6 tasks, and 7 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:35:52,595 workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/art".180514-10:35:52,602 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/applywarp_mean".
180514-10:35:52,634 workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/bet_anat/sub-06_t1w_preproc_brain.nii.gz -out sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/coreg_bbr/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline

180514-10:35:52,670 workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
/opt/conda/envs/neuro/lib/python3.6/site-packages/nipype/algorithms/rapidart.py:542: UserWarning:
This call to matplotlib.use() has no effect because the backend has already
been chosen; matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.

The backend was *originally* set to 'module://ipykernel.pylab.backend_inline' by the following code:
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 193, in _run_module_as_main
    "__main__", mod_spec)
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 85, in _run_code
    exec(code, run_globals)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/__main__.py", line 3, in <module>
    app.launch_new_instance()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/traitlets/config/application.py", line 658, in launch_instance
    app.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelapp.py", line 486, in start
    self.io_loop.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 127, in start
    self.asyncio_loop.run_forever()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 422, in run_forever
    self._run_once()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 1432, in _run_once
    handle._run()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/events.py", line 145, in _run
    self._callback(*self._args)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 117, in _handle_events
    handler_func(fileobj, events)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 450, in _handle_events
    self._handle_recv()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 480, in _handle_recv
    self._run_callback(callback, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 432, in _run_callback
    callback(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 283, in dispatcher
    return self.dispatch_shell(stream, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 233, in dispatch_shell
    handler(stream, idents, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 399, in execute_request
    user_expressions, allow_stdin)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/ipkernel.py", line 208, in do_execute
    res = shell.run_cell(code, store_history=store_history, silent=silent)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/zmqshell.py", line 537, in run_cell
    return super(ZMQInteractiveShell, self).run_cell(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/interactiveshell.py", line 2666, in run_cell
    self.events.trigger('post_run_cell', result)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/events.py", line 88, in trigger
    func(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/pylab/backend_inline.py", line 160, in configure_once
    activate_matplotlib(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/pylabtools.py", line 311, in activate_matplotlib
    matplotlib.pyplot.switch_backend(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/pyplot.py", line 231, in switch_backend
    matplotlib.use(newbackend, warn=False, force=True)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/__init__.py", line 1410, in use
    reload(sys.modules['matplotlib.backends'])
  File "/opt/conda/envs/neuro/lib/python3.6/importlib/__init__.py", line 166, in reload
    _bootstrap._exec(spec, module)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/backends/__init__.py", line 16, in <module>
    line for line in traceback.format_stack()


  matplotlib.use(config.get("execution", "matplotlib_backend"))
/opt/conda/envs/neuro/lib/python3.6/site-packages/nipype/algorithms/rapidart.py:398: UserWarning:
This call to matplotlib.use() has no effect because the backend has already
been chosen; matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.

The backend was *originally* set to 'module://ipykernel.pylab.backend_inline' by the following code:
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 193, in _run_module_as_main
    "__main__", mod_spec)
  File "/opt/conda/envs/neuro/lib/python3.6/runpy.py", line 85, in _run_code
    exec(code, run_globals)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/__main__.py", line 3, in <module>
    app.launch_new_instance()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/traitlets/config/application.py", line 658, in launch_instance
    app.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelapp.py", line 486, in start
    self.io_loop.start()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 127, in start
    self.asyncio_loop.run_forever()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 422, in run_forever
    self._run_once()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/base_events.py", line 1432, in _run_once
    handle._run()
  File "/opt/conda/envs/neuro/lib/python3.6/asyncio/events.py", line 145, in _run
    self._callback(*self._args)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/platform/asyncio.py", line 117, in _handle_events
    handler_func(fileobj, events)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 450, in _handle_events
    self._handle_recv()
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 480, in _handle_recv
    self._run_callback(callback, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/zmq/eventloop/zmqstream.py", line 432, in _run_callback
    callback(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/tornado/stack_context.py", line 276, in null_wrapper
    return fn(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 283, in dispatcher
    return self.dispatch_shell(stream, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 233, in dispatch_shell
    handler(stream, idents, msg)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/kernelbase.py", line 399, in execute_request
    user_expressions, allow_stdin)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/ipkernel.py", line 208, in do_execute
    res = shell.run_cell(code, store_history=store_history, silent=silent)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/zmqshell.py", line 537, in run_cell
    return super(ZMQInteractiveShell, self).run_cell(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/interactiveshell.py", line 2666, in run_cell
    self.events.trigger('post_run_cell', result)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/events.py", line 88, in trigger
    func(*args, **kwargs)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/ipykernel/pylab/backend_inline.py", line 160, in configure_once
    activate_matplotlib(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/IPython/core/pylabtools.py", line 311, in activate_matplotlib
    matplotlib.pyplot.switch_backend(backend)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/pyplot.py", line 231, in switch_backend
    matplotlib.use(newbackend, warn=False, force=True)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/__init__.py", line 1410, in use
    reload(sys.modules['matplotlib.backends'])
  File "/opt/conda/envs/neuro/lib/python3.6/importlib/__init__.py", line 166, in reload
    _bootstrap._exec(spec, module)
  File "/opt/conda/envs/neuro/lib/python3.6/site-packages/matplotlib/backends/__init__.py", line 16, in <module>
    line for line in traceback.format_stack()


  matplotlib.use(config.get("execution", "matplotlib_backend"))
180514-10:35:53,691 workflow INFO:
	 [Node] Finished "preproc.art".
180514-10:35:54,472 workflow INFO:
	 [Job 61] Completed (preproc.art).
180514-10:35:54,481 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.applywarp_mean
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:35:54,543 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/applywarp".
180514-10:35:54,591 workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/slicetimer/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/bet_anat/sub-06_t1w_preproc_brain.nii.gz -out sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/coreg_bbr/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
180514-10:35:56,143 workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
180514-10:35:56,477 workflow INFO:
	 [Job 72] Completed (preproc.coregwf.applywarp_mean).
180514-10:35:56,497 workflow INFO:
	 [MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.applywarp
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:35:56,666 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/threshold".
180514-10:35:56,701 workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/segmentation/sub-04_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/threshold/sub-04_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:35:58,166 workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
180514-10:35:58,495 workflow INFO:
	 [Job 99] Completed (preproc.coregwf.threshold).
180514-10:35:58,522 workflow INFO:
	 [MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.applywarp
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:35:58,646 workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/coreg_bbr".
180514-10:35:58,683 workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_preproc.nii.gz -out sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/coreg_pre/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/threshold/sub-04_t1w_preproc_brain_pve_2_thresh.nii.gz
180514-10:36:00,500 workflow INFO:
	 [MultiProc] Running 8 tasks, and 3 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.applywarp
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:36:15,839 workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
180514-10:36:16,515 workflow INFO:
	 [Job 74] Completed (preproc.coregwf.applywarp).
180514-10:36:16,521 workflow INFO:
	 [MultiProc] Running 7 tasks, and 6 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.coregwf.coreg_bbr
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:36:16,598 workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/_fwhm_8/smooth".
180514-10:36:16,618 workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
180514-10:36:18,517 workflow INFO:
	 [MultiProc] Running 8 tasks, and 5 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:36:18,712 workflow INFO:
	 [Node] Finished "preproc.smooth".
180514-10:36:20,515 workflow INFO:
	 [Job 59] Completed (preproc.smooth).
180514-10:36:20,547 workflow INFO:
	 [MultiProc] Running 7 tasks, and 6 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:36:20,656 workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/_fwhm_8/datasink".
180514-10:36:20,709 workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:36:20,726 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_t1w_preproc_brain.nii.gz
180514-10:36:20,761 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/art.sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-07/task-fingerfootlips/art.sub-07_ses-test_task-fingerfootlips_bold_outliers.txt
180514-10:36:20,786 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/plot.sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-07/task-fingerfootlips/plot.sub-07_ses-test_task-fingerfootlips_bold.svg
180514-10:36:20,826 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_mean.nii.gz
180514-10:36:20,854 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold.par
180514-10:36:20,871 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/_fwhm_8/ssub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-07/task-fingerfootlips/fwhm-8_ssub-07_ses-test_task-fingerfootlips_bold.nii
180514-10:36:20,902 interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_mean.mat
180514-10:36:20,936 workflow INFO:
	 [Node] Finished "preproc.datasink".
180514-10:36:22,518 workflow INFO:
	 [Job 62] Completed (preproc.datasink).
180514-10:36:22,523 workflow INFO:
	 [MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:36:22,593 workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/_fwhm_4/smooth".
180514-10:36:22,602 workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
180514-10:36:24,522 workflow INFO:
	 [MultiProc] Running 8 tasks, and 4 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
                     Currently running:
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.smooth
                       * preproc.coregwf.coreg_bbr
                       * preproc.coregwf.segmentation
180514-10:36:29,307 workflow INFO:
	 [Node] Finished "preproc.smooth".
180514-10:36:30,528 workflow INFO:
	 [Job 43] Completed (preproc.