Example 3: Normalize data to MNI template¶
This example covers the normalization of data. Some people prefer to normalize the data during the preprocessing, just before smoothing. I prefer to do the 1st-level analysis completely in subject space and only normalize the contrasts for the 2nd-level analysis. But both approaches are fine.
For the current example, we will take the computed 1st-level contrasts from the previous experiment (again once done with fwhm=4mm and fwhm=8mm) and normalize them into MNI-space. To show two different approaches, we will do the normalization once with ANTs and once with SPM.
Preparation¶
Before we can start with the ANTs example, we first need to download the already computed deforamation field. The data can be found in the derivatives/fmriprep folder of the dataset and can be downloaded with the following datalad command:
In [ ]:
%%bash
datalad get -J 4 /data/ds000114/derivatives/fmriprep/sub-0[2345789]/anat/*h5
get(notneeded): /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5 (file) [already present] get(notneeded): /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5 (file) [already present] get(notneeded): /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5 (file) [already present] get(notneeded): /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5 (file) [already present] get(notneeded): /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5 (file) [already present] get(notneeded): /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5 (file) [already present] get(notneeded): /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5 (file) [already present] action summary: get (notneeded: 7)
Note: This might take a while, as datalad needs to download ~710MB of data
Alternatively: Prepare yourself¶
We're using the precomputed warp field from fmriprep, as this step otherwise would take a up to 10 hours or more for all subjects to complete. If you're nonetheless interested in computing the warp parameters with ANTs yourself, without using fmriprep, either check out the script ANTS_registration.py or even quicker, use RegistrationSynQuick, Nipype's implementation of antsRegistrationSynQuick.sh.
Normalization with ANTs¶
The normalization with ANTs requires that you first compute the transformation matrix that would bring the anatomical images of each subject into template space. Depending on your system this might take a few hours per subject. To facilitate this step, the transformation matrix is already computed for the T1 images.
The data for it can be found under:
In [ ]:
!ls /data/ds000114/derivatives/fmriprep/sub-*/anat/*h5
/data/ds000114/derivatives/fmriprep/sub-01/anat/sub-01_t1w_space-mni152nlin2009casym_warp.h5 /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5 /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5 /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5 /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5 /data/ds000114/derivatives/fmriprep/sub-06/anat/sub-06_t1w_space-mni152nlin2009casym_warp.h5 /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5 /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5 /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5 /data/ds000114/derivatives/fmriprep/sub-10/anat/sub-10_t1w_space-mni152nlin2009casym_warp.h5
Now, let's start with the ANTs normalization workflow!
Imports (ANTs)¶
First, we need to import all modules we later want to use.
In [ ]:
from os.path import join as opj
from nipype import Workflow, Node, MapNode
from nipype.interfaces.ants import ApplyTransforms
from nipype.interfaces.utility import IdentityInterface
from nipype.interfaces.io import SelectFiles, DataSink
from nipype.interfaces.fsl import Info
Experiment parameters (ANTs)¶
It's always a good idea to specify all parameters that might change between experiments at the beginning of your script. And remember that we decided to run the group analysis without subject sub-01, sub-06 and sub-10 because they are left handed (see this section).
In [ ]:
experiment_dir = '/output'
output_dir = 'datasink'
working_dir = 'workingdir'
# list of subject identifiers (remember we use only right handed subjects)
subject_list = ['02', '03', '04', '05', '07', '08', '09']
# task name
task_name = "fingerfootlips"
# Smoothing widths used during preprocessing
fwhm = [4, 8]
# Template to normalize to
template = '/data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz'
Note if you're not using the corresponding docker image, than the template file might not be in your data directory. To get mni_icbm152_nlin_asym_09c, either download it from this website, unpack it and move it to /data/ds000114/derivatives/fmriprep/ or run the following command in a cell:
%%bash
curl -L https://files.osf.io/v1/resources/fvuh8/providers/osfstorage/580705089ad5a101f17944a9 \
-o /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c.tar.gz
tar xf /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c.tar.gz \
-C /data/ds000114/derivatives/fmriprep/.
rm /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c.tar.gz
Specify Nodes (ANTs)¶
Initiate all the different interfaces (represented as nodes) that you want to use in your workflow.
In [ ]:
# Apply Transformation - applies the normalization matrix to contrast images
apply2con = MapNode(ApplyTransforms(args='--float',
input_image_type=3,
interpolation='BSpline',
invert_transform_flags=[False],
num_threads=1,
reference_image=template,
terminal_output='file'),
name='apply2con', iterfield=['input_image'])
Specify input & output stream (ANTs)¶
Specify where the input data can be found & where and how to save the output data.
In [ ]:
# Infosource - a function free node to iterate over the list of subject names
infosource = Node(IdentityInterface(fields=['subject_id', 'fwhm_id']),
name="infosource")
infosource.iterables = [('subject_id', subject_list),
('fwhm_id', fwhm)]
# SelectFiles - to grab the data (alternativ to DataGrabber)
templates = {'con': opj(output_dir, '1stLevel',
'sub-{subject_id}/fwhm-{fwhm_id}', '???_00??.nii'),
'transform': opj('/data/ds000114/derivatives/fmriprep/', 'sub-{subject_id}', 'anat',
'sub-{subject_id}_t1w_space-mni152nlin2009casym_warp.h5')}
selectfiles = Node(SelectFiles(templates,
base_directory=experiment_dir,
sort_filelist=True),
name="selectfiles")
# Datasink - creates output folder for important outputs
datasink = Node(DataSink(base_directory=experiment_dir,
container=output_dir),
name="datasink")
# Use the following DataSink output substitutions
substitutions = [('_subject_id_', 'sub-')]
subjFolders = [('_fwhm_id_%ssub-%s' % (f, sub), 'sub-%s_fwhm%s' % (sub, f))
for f in fwhm
for sub in subject_list]
subjFolders += [('_apply2con%s/' % (i), '') for i in range(9)] # number of contrast used in 1stlevel an.
substitutions.extend(subjFolders)
datasink.inputs.substitutions = substitutions
Specify Workflow (ANTs)¶
Create a workflow and connect the interface nodes and the I/O stream to each other.
In [ ]:
# Initiation of the ANTs normalization workflow
antsflow = Workflow(name='antsflow')
antsflow.base_dir = opj(experiment_dir, working_dir)
# Connect up the ANTs normalization components
antsflow.connect([(infosource, selectfiles, [('subject_id', 'subject_id'),
('fwhm_id', 'fwhm_id')]),
(selectfiles, apply2con, [('con', 'input_image'),
('transform', 'transforms')]),
(apply2con, datasink, [('output_image', 'norm_ants.@con')]),
])
Visualize the workflow (ANTs)¶
It always helps to visualize your workflow.
In [ ]:
# Create ANTs normalization graph
antsflow.write_graph(graph2use='colored', format='png', simple_form=True)
# Visualize the graph
from IPython.display import Image
Image(filename=opj(antsflow.base_dir, 'antsflow', 'graph.png'))
180514-10:55:27,303 workflow INFO: Generated workflow graph: /output/workingdir/antsflow/graph.png (graph2use=colored, simple_form=True).
Out[ ]:
Run the Workflow (ANTs)¶
Now that everything is ready, we can run the ANTs normalization workflow. Change n_procs to the number of jobs/cores you want to use.
In [ ]:
antsflow.run('MultiProc', plugin_args={'n_procs': 8})
180514-10:55:27,373 workflow INFO:
Workflow antsflow settings: ['check', 'execution', 'logging', 'monitoring']
180514-10:55:27,451 workflow INFO:
Running in parallel.
180514-10:55:27,456 workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
180514-10:55:27,507 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/selectfiles".180514-10:55:27,509 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/selectfiles".
180514-10:55:27,514 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/selectfiles".180514-10:55:27,512 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/selectfiles".
180514-10:55:27,516 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:55:27,518 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/selectfiles".180514-10:55:27,518 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:55:27,522 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/selectfiles".180514-10:55:27,524 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:55:27,524 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/selectfiles".
180514-10:55:27,526 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")180514-10:55:27,530 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/selectfiles".180514-10:55:27,533 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:55:27,540 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:55:27,541 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")180514-10:55:27,541 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:55:27,548 workflow INFO:
[Node] Finished "antsflow.selectfiles".
180514-10:55:27,536 workflow INFO:
[Node] Finished "antsflow.selectfiles".180514-10:55:27,556 workflow INFO:
[Node] Finished "antsflow.selectfiles".
180514-10:55:27,562 workflow INFO:
[Node] Finished "antsflow.selectfiles".
180514-10:55:27,563 workflow INFO:
[Node] Finished "antsflow.selectfiles".180514-10:55:27,568 workflow INFO:
[Node] Finished "antsflow.selectfiles".
180514-10:55:27,570 workflow INFO:
[Node] Finished "antsflow.selectfiles".180514-10:55:27,554 workflow INFO:
[Node] Finished "antsflow.selectfiles".
180514-10:55:29,458 workflow INFO:
[Job 0] Completed (antsflow.selectfiles).
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[Job 3] Completed (antsflow.selectfiles).
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[Job 6] Completed (antsflow.selectfiles).
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[Job 9] Completed (antsflow.selectfiles).
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[Job 12] Completed (antsflow.selectfiles).
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[Job 15] Completed (antsflow.selectfiles).
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[Job 18] Completed (antsflow.selectfiles).
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[Job 21] Completed (antsflow.selectfiles).
180514-10:55:29,472 workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
180514-10:55:29,618 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/selectfiles".180514-10:55:29,620 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/selectfiles".
180514-10:55:29,621 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/selectfiles".
180514-10:55:29,623 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")180514-10:55:29,626 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/selectfiles".180514-10:55:29,627 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:55:29,628 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/selectfiles".180514-10:55:29,627 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:55:29,631 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:55:29,636 workflow INFO:
[Node] Setting-up "antsflow.selectfiles" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/selectfiles".180514-10:55:29,637 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:55:29,639 workflow INFO:
[Node] Finished "antsflow.selectfiles".
180514-10:55:29,642 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")180514-10:55:29,642 workflow INFO:
[Node] Finished "antsflow.selectfiles".
180514-10:55:29,646 workflow INFO:
[Node] Finished "antsflow.selectfiles".180514-10:55:29,640 workflow INFO:
[Node] Finished "antsflow.selectfiles".
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[Node] Finished "antsflow.selectfiles".
180514-10:55:29,655 workflow INFO:
[Node] Finished "antsflow.selectfiles".
180514-10:55:31,459 workflow INFO:
[Job 24] Completed (antsflow.selectfiles).
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[Job 27] Completed (antsflow.selectfiles).
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[Job 30] Completed (antsflow.selectfiles).
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[Job 33] Completed (antsflow.selectfiles).
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[Job 36] Completed (antsflow.selectfiles).
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[Job 39] Completed (antsflow.selectfiles).
180514-10:55:31,473 workflow INFO:
[MultiProc] Running 0 tasks, and 78 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
180514-10:55:31,602 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con0".
180514-10:55:31,605 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con1".
180514-10:55:31,607 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con2".180514-10:55:31,610 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-8/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:55:31,610 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con3".180514-10:55:31,612 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-8/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:31,619 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-8/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:55:31,620 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con5".
180514-10:55:31,613 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con4".
180514-10:55:31,626 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con6".
180514-10:55:31,633 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-8/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:55:31,632 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con7".180514-10:55:31,633 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-8/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:31,641 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-8/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:55:31,641 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-8/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:55:31,636 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-8/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:33,463 workflow INFO:
[MultiProc] Running 8 tasks, and 118 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
180514-10:55:43,424 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:55:43,472 workflow INFO:
[Job 47] Completed (_apply2con5).
180514-10:55:43,481 workflow INFO:
[MultiProc] Running 7 tasks, and 118 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con7
* _apply2con6
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
180514-10:55:43,495 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:55:43,533 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con8".
180514-10:55:43,561 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-8/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:43,952 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:55:44,59 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:55:44,239 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:55:44,247 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:55:44,349 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:55:44,643 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:55:45,479 workflow INFO:
[Job 42] Completed (_apply2con0).
180514-10:55:45,480 workflow INFO:
[Job 43] Completed (_apply2con1).
180514-10:55:45,483 workflow INFO:
[Job 44] Completed (_apply2con2).
180514-10:55:45,484 workflow INFO:
[Job 45] Completed (_apply2con3).
180514-10:55:45,486 workflow INFO:
[Job 46] Completed (_apply2con4).
180514-10:55:45,487 workflow INFO:
[Job 48] Completed (_apply2con6).
180514-10:55:45,489 workflow INFO:
[Job 49] Completed (_apply2con7).
180514-10:55:45,493 workflow INFO:
[MultiProc] Running 1 tasks, and 117 jobs ready. Free memory (GB): 53.74/53.94, Free processors: 7/8.
Currently running:
* _apply2con8
180514-10:55:45,538 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con0".
180514-10:55:45,544 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con1".
180514-10:55:45,545 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-4/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:45,550 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con3".180514-10:55:45,552 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-4/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:55:45,553 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con4".
180514-10:55:45,546 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con2".
180514-10:55:45,557 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con5".
180514-10:55:45,563 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-4/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:55:45,563 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-4/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:55:45,564 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con6".
180514-10:55:45,572 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-4/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:45,572 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-4/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:45,585 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-4/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:47,482 workflow INFO:
[MultiProc] Running 8 tasks, and 110 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
180514-10:55:53,449 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:55:55,437 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:55:55,488 workflow INFO:
[Job 50] Completed (_apply2con8).
180514-10:55:55,489 workflow INFO:
[Job 51] Completed (_apply2con0).
180514-10:55:55,494 workflow INFO:
[MultiProc] Running 6 tasks, and 111 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
180514-10:55:55,542 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con".
180514-10:55:55,549 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con7".
180514-10:55:55,561 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con0".
180514-10:55:55,585 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:55:55,597 workflow INFO:
[Node] "_apply2con0" found cached.180514-10:55:55,604 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-4/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:55,616 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con1".
180514-10:55:55,626 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:55:55,647 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:55:55,657 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con2".
180514-10:55:55,669 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:55:55,680 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:55:55,700 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con3".
180514-10:55:55,739 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:55:55,769 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:55:55,791 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con4".
180514-10:55:55,835 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:55:55,872 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:55:55,892 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con5".
180514-10:55:55,942 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:55:55,972 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:55:56,18 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con6".
180514-10:55:56,54 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:55:56,81 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:55:56,110 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con7".
180514-10:55:56,131 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:55:56,151 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:55:56,183 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/apply2con/mapflow/_apply2con8".
180514-10:55:56,203 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:55:56,229 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:55:56,262 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:55:56,995 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:55:57,14 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:55:57,84 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:55:57,136 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:55:57,339 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:55:57,444 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:55:57,492 workflow INFO:
[Job 52] Completed (_apply2con1).
180514-10:55:57,494 workflow INFO:
[Job 53] Completed (_apply2con2).
180514-10:55:57,495 workflow INFO:
[Job 54] Completed (_apply2con3).
180514-10:55:57,497 workflow INFO:
[Job 55] Completed (_apply2con4).
180514-10:55:57,498 workflow INFO:
[Job 56] Completed (_apply2con5).
180514-10:55:57,500 workflow INFO:
[Job 57] Completed (_apply2con6).
180514-10:55:57,501 workflow INFO:
[Job 1] Completed (antsflow.apply2con).
180514-10:55:57,505 workflow INFO:
[MultiProc] Running 1 tasks, and 110 jobs ready. Free memory (GB): 53.74/53.94, Free processors: 7/8.
Currently running:
* _apply2con7
180514-10:55:57,552 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_09/datasink".
180514-10:55:57,554 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con8".
180514-10:55:57,560 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-09/fwhm-4/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:57,562 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con1".180514-10:55:57,557 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con0".180514-10:55:57,561 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:55:57,565 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con2".
180514-10:55:57,570 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_09/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm8/con_0001_trans.nii
180514-10:55:57,573 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con3".180514-10:55:57,573 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-8/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:57,573 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con4".
180514-10:55:57,573 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-8/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:57,576 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_09/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm8/con_0002_trans.nii
180514-10:55:57,582 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-8/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:55:57,587 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-8/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:55:57,583 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-8/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:55:57,587 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_09/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm8/con_0003_trans.nii
180514-10:55:57,602 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_09/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm8/con_0004_trans.nii
180514-10:55:57,609 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_09/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm8/con_0005_trans.nii
180514-10:55:57,617 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_09/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm8/con_0006_trans.nii
180514-10:55:57,626 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_09/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm8/con_0007_trans.nii
180514-10:55:57,633 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_09/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm8/ess_0008_trans.nii
180514-10:55:57,644 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_09/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm8/ess_0009_trans.nii
180514-10:55:57,657 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:55:59,494 workflow INFO:
[Job 2] Completed (antsflow.datasink).
180514-10:55:59,535 workflow INFO:
[MultiProc] Running 7 tasks, and 103 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
180514-10:55:59,630 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con5".
180514-10:55:59,670 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-8/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:01,500 workflow INFO:
[MultiProc] Running 8 tasks, and 102 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
180514-10:56:06,747 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:56:07,503 workflow INFO:
[Job 58] Completed (_apply2con7).
180514-10:56:07,519 workflow INFO:
[MultiProc] Running 7 tasks, and 102 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
180514-10:56:07,560 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:56:07,589 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con6".
180514-10:56:07,605 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-8/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:09,506 workflow INFO:
[Job 59] Completed (_apply2con8).
180514-10:56:09,535 workflow INFO:
[MultiProc] Running 7 tasks, and 102 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
180514-10:56:09,583 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:56:09,593 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:56:09,610 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:56:09,613 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:56:09,615 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:56:09,633 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con".
180514-10:56:09,642 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con0".
180514-10:56:09,649 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:56:09,657 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:56:09,664 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con1".
180514-10:56:09,669 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:56:09,672 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:56:09,676 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con2".
180514-10:56:09,684 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:56:09,690 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:56:09,694 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con3".
180514-10:56:09,698 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:56:09,701 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:56:09,704 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con4".
180514-10:56:09,708 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:56:09,711 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:56:09,715 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con5".
180514-10:56:09,719 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:56:09,722 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:56:09,726 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con6".
180514-10:56:09,730 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:56:09,733 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:56:09,738 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con7".
180514-10:56:09,742 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:56:09,745 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:56:09,749 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/apply2con/mapflow/_apply2con8".
180514-10:56:09,752 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:56:09,755 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:56:09,768 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:56:10,749 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:56:11,508 workflow INFO:
[Job 60] Completed (_apply2con0).
180514-10:56:11,509 workflow INFO:
[Job 61] Completed (_apply2con1).
180514-10:56:11,510 workflow INFO:
[Job 62] Completed (_apply2con2).
180514-10:56:11,511 workflow INFO:
[Job 63] Completed (_apply2con3).
180514-10:56:11,513 workflow INFO:
[Job 64] Completed (_apply2con4).
180514-10:56:11,514 workflow INFO:
[Job 65] Completed (_apply2con5).
180514-10:56:11,516 workflow INFO:
[Job 4] Completed (antsflow.apply2con).
180514-10:56:11,520 workflow INFO:
[MultiProc] Running 1 tasks, and 102 jobs ready. Free memory (GB): 53.74/53.94, Free processors: 7/8.
Currently running:
* _apply2con6
180514-10:56:11,569 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_09/datasink".
180514-10:56:11,571 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con7".
180514-10:56:11,575 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con8".180514-10:56:11,579 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")180514-10:56:11,585 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_09/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm4/con_0001_trans.nii180514-10:56:11,580 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-8/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:11,582 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con1".
180514-10:56:11,578 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con0".
180514-10:56:11,587 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con2".
180514-10:56:11,595 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-8/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:11,589 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-4/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:11,589 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con3".180514-10:56:11,593 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-4/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:11,598 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-4/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:11,600 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_09/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm4/con_0002_trans.nii
180514-10:56:11,604 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_09/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm4/con_0003_trans.nii
180514-10:56:11,607 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_09/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm4/con_0004_trans.nii
180514-10:56:11,612 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_09/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm4/con_0005_trans.nii
180514-10:56:11,618 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_09/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm4/con_0006_trans.nii
180514-10:56:11,624 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_09/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm4/con_0007_trans.nii
180514-10:56:11,627 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_09/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm4/ess_0008_trans.nii
180514-10:56:11,631 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_09/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-09_fwhm4/ess_0009_trans.nii
180514-10:56:11,638 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-4/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:11,643 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:56:13,510 workflow INFO:
[Job 5] Completed (antsflow.datasink).
180514-10:56:13,517 workflow INFO:
[MultiProc] Running 7 tasks, and 95 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:56:13,563 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con4".
180514-10:56:13,628 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-4/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:15,516 workflow INFO:
[MultiProc] Running 8 tasks, and 94 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:56:16,554 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:56:17,516 workflow INFO:
[Job 66] Completed (_apply2con6).
180514-10:56:17,539 workflow INFO:
[MultiProc] Running 7 tasks, and 94 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
180514-10:56:17,624 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con5".
180514-10:56:18,234 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-4/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:19,522 workflow INFO:
[MultiProc] Running 8 tasks, and 93 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
180514-10:56:21,636 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:56:22,149 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:56:22,505 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:56:22,641 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:56:22,862 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:56:22,937 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:56:23,524 workflow INFO:
[Job 67] Completed (_apply2con7).
180514-10:56:23,525 workflow INFO:
[Job 68] Completed (_apply2con8).
180514-10:56:23,526 workflow INFO:
[Job 69] Completed (_apply2con0).
180514-10:56:23,528 workflow INFO:
[Job 70] Completed (_apply2con1).
180514-10:56:23,529 workflow INFO:
[Job 71] Completed (_apply2con2).
180514-10:56:23,530 workflow INFO:
[Job 72] Completed (_apply2con3).
180514-10:56:23,533 workflow INFO:
[MultiProc] Running 2 tasks, and 94 jobs ready. Free memory (GB): 53.54/53.94, Free processors: 6/8.
Currently running:
* _apply2con5
* _apply2con4
180514-10:56:23,577 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con".
180514-10:56:23,579 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con6".
180514-10:56:23,583 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con7".180514-10:56:23,587 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con0".
180514-10:56:23,589 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-4/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:23,590 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con0".180514-10:56:23,593 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:56:23,598 workflow INFO:
[Node] "_apply2con0" found cached.180514-10:56:23,596 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con1".
180514-10:56:23,603 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-8/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:23,588 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con8".
180514-10:56:23,610 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-8/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:23,613 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-4/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:23,613 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con1".
180514-10:56:23,618 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-08/fwhm-4/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:23,627 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:56:23,639 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:56:23,649 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con2".
180514-10:56:23,657 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:56:23,663 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:56:23,681 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con3".
180514-10:56:23,708 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:56:23,742 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:56:23,770 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con4".
180514-10:56:23,791 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:56:23,824 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:56:23,851 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con5".
180514-10:56:23,871 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:56:23,890 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:56:23,896 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con6".
180514-10:56:23,911 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:56:23,928 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:56:23,942 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con7".
180514-10:56:23,963 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:56:23,990 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:56:23,981 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:56:24,9 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/apply2con/mapflow/_apply2con8".
180514-10:56:24,20 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:56:24,28 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:56:24,50 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:56:25,526 workflow INFO:
[Job 73] Completed (_apply2con4).
180514-10:56:25,528 workflow INFO:
[Job 7] Completed (antsflow.apply2con).
180514-10:56:25,534 workflow INFO:
[MultiProc] Running 6 tasks, and 89 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
180514-10:56:25,583 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_08/datasink".
180514-10:56:25,585 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con2".180514-10:56:25,596 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:56:25,610 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_08/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm8/con_0001_trans.nii180514-10:56:25,610 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-8/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:25,615 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_08/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm8/con_0002_trans.nii
180514-10:56:25,631 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_08/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm8/con_0003_trans.nii
180514-10:56:25,643 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_08/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm8/con_0004_trans.nii
180514-10:56:25,655 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_08/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm8/con_0005_trans.nii
180514-10:56:25,671 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_08/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm8/con_0006_trans.nii
180514-10:56:25,682 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_08/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm8/con_0007_trans.nii
180514-10:56:25,696 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_08/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm8/ess_0008_trans.nii
180514-10:56:25,712 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_08/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm8/ess_0009_trans.nii
180514-10:56:25,733 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:56:27,529 workflow INFO:
[Job 8] Completed (antsflow.datasink).
180514-10:56:27,533 workflow INFO:
[MultiProc] Running 7 tasks, and 87 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
180514-10:56:27,574 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con3".
180514-10:56:27,616 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-8/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:28,481 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:56:29,533 workflow INFO:
[Job 74] Completed (_apply2con5).
180514-10:56:29,537 workflow INFO:
[MultiProc] Running 7 tasks, and 86 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:56:29,632 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con4".
180514-10:56:29,670 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-8/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:31,538 workflow INFO:
[MultiProc] Running 8 tasks, and 85 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:56:33,605 workflow INFO:
[Node] Finished "_apply2con6".180514-10:56:33,605 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:56:33,768 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:56:33,988 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:56:34,431 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:56:35,541 workflow INFO:
[Job 75] Completed (_apply2con6).
180514-10:56:35,542 workflow INFO:
[Job 76] Completed (_apply2con7).
180514-10:56:35,544 workflow INFO:
[Job 77] Completed (_apply2con8).
180514-10:56:35,545 workflow INFO:
[Job 78] Completed (_apply2con0).
180514-10:56:35,543 workflow INFO:
[Node] Finished "_apply2con2".180514-10:56:35,547 workflow INFO:
[Job 79] Completed (_apply2con1).
180514-10:56:35,550 workflow INFO:
[MultiProc] Running 3 tasks, and 86 jobs ready. Free memory (GB): 53.34/53.94, Free processors: 5/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
180514-10:56:35,594 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con".180514-10:56:35,595 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con5".
180514-10:56:35,597 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con6".180514-10:56:35,604 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con7".
180514-10:56:35,605 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con0".
180514-10:56:35,606 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con8".180514-10:56:35,602 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-8/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:35,612 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-8/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:35,613 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-8/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:35,611 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:56:35,624 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-8/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:35,625 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:56:35,634 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con1".
180514-10:56:35,648 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:56:35,654 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:56:35,667 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con2".
180514-10:56:35,682 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:56:35,692 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:56:35,710 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con3".
180514-10:56:35,723 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:56:35,741 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:56:35,755 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con4".
180514-10:56:35,761 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:56:35,771 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:56:35,782 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con5".
180514-10:56:35,791 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:56:35,808 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:56:35,826 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con6".
180514-10:56:35,839 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:56:35,848 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:56:35,857 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con7".
180514-10:56:35,862 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:56:35,873 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:56:35,884 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/apply2con/mapflow/_apply2con8".
180514-10:56:35,892 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:56:35,905 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:56:35,928 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:56:36,861 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:56:37,542 workflow INFO:
[Job 80] Completed (_apply2con2).
180514-10:56:37,544 workflow INFO:
[Job 81] Completed (_apply2con3).
180514-10:56:37,545 workflow INFO:
[Job 10] Completed (antsflow.apply2con).
180514-10:56:37,549 workflow INFO:
[MultiProc] Running 5 tasks, and 82 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
180514-10:56:37,597 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_08/datasink".180514-10:56:37,601 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con0".
180514-10:56:37,602 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con1".
180514-10:56:37,619 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-4/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:37,613 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:56:37,625 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-4/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:37,644 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_08/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm4/con_0001_trans.nii
180514-10:56:37,663 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_08/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm4/con_0002_trans.nii
180514-10:56:37,676 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_08/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm4/con_0003_trans.nii
180514-10:56:37,684 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_08/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm4/con_0004_trans.nii
180514-10:56:37,725 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_08/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm4/con_0005_trans.nii
180514-10:56:37,757 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_08/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm4/con_0006_trans.nii
180514-10:56:37,801 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_08/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm4/con_0007_trans.nii
180514-10:56:37,814 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_08/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm4/ess_0008_trans.nii
180514-10:56:37,845 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_08/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-08_fwhm4/ess_0009_trans.nii
180514-10:56:37,892 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:56:39,544 workflow INFO:
[Job 11] Completed (antsflow.datasink).
180514-10:56:39,548 workflow INFO:
[MultiProc] Running 7 tasks, and 79 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
180514-10:56:39,594 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con2".
180514-10:56:39,620 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-4/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:40,22 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:56:41,548 workflow INFO:
[Job 82] Completed (_apply2con4).
180514-10:56:41,552 workflow INFO:
[MultiProc] Running 7 tasks, and 78 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
180514-10:56:41,637 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con3".
180514-10:56:41,670 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-4/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:43,554 workflow INFO:
[MultiProc] Running 8 tasks, and 77 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
180514-10:56:45,490 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:56:45,554 workflow INFO:
[Job 85] Completed (_apply2con7).
180514-10:56:45,558 workflow INFO:
[MultiProc] Running 7 tasks, and 77 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con6
* _apply2con5
180514-10:56:45,631 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con4".
180514-10:56:45,681 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-4/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:45,750 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:56:45,854 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:56:47,305 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:56:47,318 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:56:47,559 workflow INFO:
[Job 83] Completed (_apply2con5).
180514-10:56:47,561 workflow INFO:
[Job 84] Completed (_apply2con6).
180514-10:56:47,563 workflow INFO:
[Job 86] Completed (_apply2con8).
180514-10:56:47,564 workflow INFO:
[Job 88] Completed (_apply2con1).
180514-10:56:47,567 workflow INFO:
[MultiProc] Running 4 tasks, and 77 jobs ready. Free memory (GB): 53.14/53.94, Free processors: 4/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con0
180514-10:56:47,631 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con".
180514-10:56:47,633 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con5".180514-10:56:47,635 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con6".
180514-10:56:47,640 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con7".180514-10:56:47,642 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con0".
180514-10:56:47,646 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-4/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:47,646 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-4/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:47,648 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:56:47,653 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-4/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:47,654 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:56:47,659 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con1".
180514-10:56:47,668 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:56:47,673 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:56:47,684 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con2".
180514-10:56:47,689 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:56:47,706 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:56:47,713 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con3".
180514-10:56:47,719 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:56:47,724 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:56:47,731 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con4".
180514-10:56:47,739 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:56:47,744 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:56:47,752 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con5".
180514-10:56:47,760 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:56:47,765 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:56:47,772 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con6".
180514-10:56:47,779 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:56:47,783 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:56:47,790 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con7".
180514-10:56:47,797 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:56:47,802 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:56:47,809 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/apply2con/mapflow/_apply2con8".
180514-10:56:47,816 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:56:47,821 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:56:47,836 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:56:48,155 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:56:48,788 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:56:49,560 workflow INFO:
[Job 87] Completed (_apply2con0).
180514-10:56:49,562 workflow INFO:
[Job 89] Completed (_apply2con2).
180514-10:56:49,563 workflow INFO:
[Job 13] Completed (antsflow.apply2con).
180514-10:56:49,566 workflow INFO:
[MultiProc] Running 5 tasks, and 74 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
180514-10:56:49,615 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_07/datasink".
180514-10:56:49,620 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con0".
180514-10:56:49,616 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con8".180514-10:56:49,628 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-8/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:49,638 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:56:49,649 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-07/fwhm-4/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:49,658 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_07/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm8/con_0001_trans.nii
180514-10:56:49,664 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_07/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm8/con_0002_trans.nii
180514-10:56:49,679 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_07/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm8/con_0003_trans.nii
180514-10:56:49,695 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_07/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm8/con_0004_trans.nii
180514-10:56:49,707 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_07/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm8/con_0005_trans.nii
180514-10:56:49,719 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_07/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm8/con_0006_trans.nii
180514-10:56:49,742 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_07/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm8/con_0007_trans.nii
180514-10:56:49,784 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_07/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm8/ess_0008_trans.nii
180514-10:56:49,834 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_07/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm8/ess_0009_trans.nii
180514-10:56:49,869 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:56:51,565 workflow INFO:
[Job 14] Completed (antsflow.datasink).
180514-10:56:51,571 workflow INFO:
[MultiProc] Running 7 tasks, and 71 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
180514-10:56:51,637 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con1".
180514-10:56:51,680 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-8/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:52,177 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:56:53,569 workflow INFO:
[Job 90] Completed (_apply2con3).
180514-10:56:53,588 workflow INFO:
[MultiProc] Running 7 tasks, and 70 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
180514-10:56:53,656 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con2".
180514-10:56:53,685 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-8/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:53,969 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:56:55,573 workflow INFO:
[Job 91] Completed (_apply2con4).
180514-10:56:55,596 workflow INFO:
[MultiProc] Running 7 tasks, and 69 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
180514-10:56:55,668 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con3".
180514-10:56:55,713 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-8/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:56:57,579 workflow INFO:
[MultiProc] Running 8 tasks, and 68 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
180514-10:56:58,113 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:56:58,427 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:56:58,806 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:56:59,33 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:56:59,579 workflow INFO:
[Job 92] Completed (_apply2con5).
180514-10:56:59,582 workflow INFO:
[Job 93] Completed (_apply2con6).
180514-10:56:59,584 workflow INFO:
[Job 94] Completed (_apply2con7).
180514-10:56:59,585 workflow INFO:
[Job 95] Completed (_apply2con8).
180514-10:56:59,589 workflow INFO:
[MultiProc] Running 4 tasks, and 69 jobs ready. Free memory (GB): 53.14/53.94, Free processors: 4/8.
Currently running:
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
180514-10:56:59,601 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:56:59,659 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con".180514-10:56:59,661 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con4".
180514-10:56:59,664 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con5".180514-10:56:59,668 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-8/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:59,670 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con0".180514-10:56:59,669 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con6".
180514-10:56:59,679 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-8/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:59,679 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-8/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:56:59,679 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:56:59,692 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:56:59,711 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con1".
180514-10:56:59,721 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:56:59,727 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:56:59,743 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con2".
180514-10:56:59,762 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:56:59,773 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:56:59,786 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con3".
180514-10:56:59,798 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:56:59,810 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:56:59,826 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con4".
180514-10:56:59,831 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:56:59,847 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:56:59,862 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con5".
180514-10:56:59,878 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:56:59,888 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:56:59,901 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con6".
180514-10:56:59,919 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:56:59,928 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:56:59,947 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con7".
180514-10:56:59,962 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:56:59,976 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:56:59,987 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/apply2con/mapflow/_apply2con8".
180514-10:56:59,998 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:57:00,19 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:57:00,44 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:57:01,583 workflow INFO:
[Job 96] Completed (_apply2con0).
180514-10:57:01,585 workflow INFO:
[Job 16] Completed (antsflow.apply2con).
180514-10:57:01,590 workflow INFO:
[MultiProc] Running 6 tasks, and 66 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
180514-10:57:01,656 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con7".
180514-10:57:01,652 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_07/datasink".
180514-10:57:01,676 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-8/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:01,695 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:57:01,733 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_07/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm4/con_0001_trans.nii
180514-10:57:01,753 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_07/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm4/con_0002_trans.nii
180514-10:57:01,782 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_07/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm4/con_0003_trans.nii
180514-10:57:01,797 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_07/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm4/con_0004_trans.nii
180514-10:57:01,820 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_07/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm4/con_0005_trans.nii
180514-10:57:01,846 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_07/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm4/con_0006_trans.nii
180514-10:57:01,873 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_07/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm4/con_0007_trans.nii
180514-10:57:01,889 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_07/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm4/ess_0008_trans.nii
180514-10:57:01,899 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_07/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-07_fwhm4/ess_0009_trans.nii
180514-10:57:01,919 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:57:02,196 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:57:03,583 workflow INFO:
[Job 97] Completed (_apply2con1).
180514-10:57:03,584 workflow INFO:
[Job 17] Completed (antsflow.datasink).
180514-10:57:03,589 workflow INFO:
[MultiProc] Running 6 tasks, and 64 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
180514-10:57:03,631 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con8".180514-10:57:03,635 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con0".
180514-10:57:03,662 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-8/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:57:03,660 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-4/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:03,758 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:57:04,191 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:57:05,587 workflow INFO:
[Job 98] Completed (_apply2con2).
180514-10:57:05,590 workflow INFO:
[Job 99] Completed (_apply2con3).
180514-10:57:05,594 workflow INFO:
[MultiProc] Running 6 tasks, and 62 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
180514-10:57:05,651 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con1".
180514-10:57:05,656 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con2".
180514-10:57:05,681 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-4/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:57:05,669 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-4/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:07,592 workflow INFO:
[MultiProc] Running 8 tasks, and 60 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
180514-10:57:08,101 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:57:09,593 workflow INFO:
[Job 101] Completed (_apply2con5).
180514-10:57:09,598 workflow INFO:
[MultiProc] Running 7 tasks, and 60 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con4
180514-10:57:09,656 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con3".
180514-10:57:10,74 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-4/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:10,192 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:57:10,206 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:57:10,936 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:57:11,594 workflow INFO:
[Job 100] Completed (_apply2con4).
180514-10:57:11,596 workflow INFO:
[Job 102] Completed (_apply2con6).
180514-10:57:11,597 workflow INFO:
[Job 103] Completed (_apply2con7).
180514-10:57:11,600 workflow INFO:
[MultiProc] Running 5 tasks, and 59 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
180514-10:57:11,645 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con4".
180514-10:57:11,647 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con5".180514-10:57:11,657 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-4/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:11,651 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con6".
180514-10:57:11,669 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-4/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:11,676 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-4/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:13,598 workflow INFO:
[MultiProc] Running 8 tasks, and 56 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
180514-10:57:13,741 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:57:14,131 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:57:14,615 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:57:15,270 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:57:15,598 workflow INFO:
[Job 104] Completed (_apply2con8).
180514-10:57:15,599 workflow INFO:
[Job 105] Completed (_apply2con0).
180514-10:57:15,601 workflow INFO:
[Job 106] Completed (_apply2con1).
180514-10:57:15,602 workflow INFO:
[Job 107] Completed (_apply2con2).
180514-10:57:15,606 workflow INFO:
[MultiProc] Running 4 tasks, and 57 jobs ready. Free memory (GB): 53.14/53.94, Free processors: 4/8.
Currently running:
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
180514-10:57:15,653 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con".
180514-10:57:15,657 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con7".
180514-10:57:15,661 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con0".
180514-10:57:15,665 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-4/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:15,668 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:57:15,671 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:57:15,676 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con1".180514-10:57:15,682 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con0".180514-10:57:15,677 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con8".
180514-10:57:15,689 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:57:15,694 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:57:15,700 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con2".180514-10:57:15,697 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-8/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:57:15,705 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-05/fwhm-4/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:15,718 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:57:15,733 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:57:15,744 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con3".
180514-10:57:15,751 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:57:15,759 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:57:15,778 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con4".
180514-10:57:15,790 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:57:15,825 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:57:15,857 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con5".
180514-10:57:15,882 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:57:15,900 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:57:15,914 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con6".
180514-10:57:15,946 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:57:15,977 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:57:16,0 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con7".
180514-10:57:16,13 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:57:16,34 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:57:16,67 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/apply2con/mapflow/_apply2con8".
180514-10:57:16,90 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:57:16,115 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:57:16,165 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:57:17,600 workflow INFO:
[Job 19] Completed (antsflow.apply2con).
180514-10:57:17,631 workflow INFO:
[MultiProc] Running 7 tasks, and 54 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
180514-10:57:17,708 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_05/datasink".
180514-10:57:17,774 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:57:17,806 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_05/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm8/con_0001_trans.nii
180514-10:57:17,838 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_05/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm8/con_0002_trans.nii
180514-10:57:17,857 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_05/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm8/con_0003_trans.nii
180514-10:57:17,876 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_05/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm8/con_0004_trans.nii
180514-10:57:17,901 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_05/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm8/con_0005_trans.nii
180514-10:57:17,925 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_05/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm8/con_0006_trans.nii
180514-10:57:17,953 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_05/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm8/con_0007_trans.nii
180514-10:57:17,984 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_05/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm8/ess_0008_trans.nii
180514-10:57:18,4 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_05/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm8/ess_0009_trans.nii
180514-10:57:18,33 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:57:18,955 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:57:19,605 workflow INFO:
[Job 110] Completed (_apply2con5).
180514-10:57:19,606 workflow INFO:
[Job 20] Completed (antsflow.datasink).
180514-10:57:19,610 workflow INFO:
[MultiProc] Running 6 tasks, and 53 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con4
* _apply2con3
180514-10:57:19,656 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con2".180514-10:57:19,652 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con1".
180514-10:57:19,677 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-8/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:57:19,685 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-8/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:19,824 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:57:20,821 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:57:21,466 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:57:21,609 workflow INFO:
[Job 108] Completed (_apply2con3).
180514-10:57:21,610 workflow INFO:
[Job 109] Completed (_apply2con4).
180514-10:57:21,612 workflow INFO:
[Job 111] Completed (_apply2con6).
180514-10:57:21,618 workflow INFO:
[MultiProc] Running 5 tasks, and 51 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
180514-10:57:21,659 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con3".
180514-10:57:21,661 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con4".180514-10:57:21,664 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con5".
180514-10:57:21,674 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-8/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:57:21,672 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-8/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:21,689 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-8/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:23,612 workflow INFO:
[MultiProc] Running 8 tasks, and 48 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
180514-10:57:26,540 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:57:26,621 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:57:26,655 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:57:27,614 workflow INFO:
[Job 112] Completed (_apply2con7).
180514-10:57:27,615 workflow INFO:
[Job 113] Completed (_apply2con8).
180514-10:57:27,617 workflow INFO:
[Job 114] Completed (_apply2con0).
180514-10:57:27,620 workflow INFO:
[MultiProc] Running 5 tasks, and 49 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
180514-10:57:27,669 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con".
180514-10:57:27,675 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con7".180514-10:57:27,671 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con6".
180514-10:57:27,686 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con0".180514-10:57:27,687 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-8/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:27,698 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-8/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:27,703 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:57:27,728 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:57:27,743 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con1".
180514-10:57:27,762 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:57:27,797 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:57:27,822 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con2".
180514-10:57:27,862 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:57:27,884 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:57:27,911 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con3".
180514-10:57:27,938 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:57:27,960 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:57:27,977 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con4".
180514-10:57:28,14 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:57:28,36 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:57:28,75 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con5".
180514-10:57:28,111 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:57:28,137 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:57:28,160 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con6".
180514-10:57:28,182 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:57:28,203 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:57:28,224 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con7".
180514-10:57:28,247 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:57:28,273 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:57:28,294 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/apply2con/mapflow/_apply2con8".
180514-10:57:28,325 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:57:28,344 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:57:28,382 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:57:29,100 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:57:29,517 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:57:29,616 workflow INFO:
[Job 115] Completed (_apply2con1).
180514-10:57:29,618 workflow INFO:
[Job 116] Completed (_apply2con2).
180514-10:57:29,619 workflow INFO:
[Job 22] Completed (antsflow.apply2con).
180514-10:57:29,622 workflow INFO:
[MultiProc] Running 5 tasks, and 47 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
180514-10:57:29,670 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_05/datasink".
180514-10:57:29,672 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con8".180514-10:57:29,675 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con0".180514-10:57:29,681 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:57:29,691 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-8/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:29,698 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_05/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm4/con_0001_trans.nii
180514-10:57:29,705 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_05/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm4/con_0002_trans.nii
180514-10:57:29,718 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-4/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:57:29,725 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_05/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm4/con_0003_trans.nii
180514-10:57:29,753 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_05/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm4/con_0004_trans.nii
180514-10:57:29,761 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_05/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm4/con_0005_trans.nii
180514-10:57:29,772 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_05/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm4/con_0006_trans.nii
180514-10:57:29,805 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_05/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm4/con_0007_trans.nii
180514-10:57:29,826 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_05/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm4/ess_0008_trans.nii
180514-10:57:29,849 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_05/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-05_fwhm4/ess_0009_trans.nii
180514-10:57:29,873 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:57:31,41 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:57:31,548 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:57:31,618 workflow INFO:
[Job 118] Completed (_apply2con4).
180514-10:57:31,619 workflow INFO:
[Job 119] Completed (_apply2con5).
180514-10:57:31,621 workflow INFO:
[Job 23] Completed (antsflow.datasink).
180514-10:57:31,624 workflow INFO:
[MultiProc] Running 5 tasks, and 44 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con3
180514-10:57:31,665 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con1".180514-10:57:31,667 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con2".
180514-10:57:31,672 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con3".
180514-10:57:31,678 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-4/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:31,688 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-4/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:57:31,693 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-4/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:32,362 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:57:33,622 workflow INFO:
[Job 117] Completed (_apply2con3).
180514-10:57:33,639 workflow INFO:
[MultiProc] Running 7 tasks, and 41 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:57:33,707 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con4".
180514-10:57:33,751 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-4/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:35,628 workflow INFO:
[MultiProc] Running 8 tasks, and 40 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:57:37,819 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:57:37,848 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:57:38,322 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:57:39,630 workflow INFO:
[Job 120] Completed (_apply2con6).
180514-10:57:39,631 workflow INFO:
[Job 121] Completed (_apply2con7).
180514-10:57:39,633 workflow INFO:
[Job 123] Completed (_apply2con0).
180514-10:57:39,636 workflow INFO:
[MultiProc] Running 5 tasks, and 40 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con8
180514-10:57:39,684 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con5".180514-10:57:39,686 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con6".
180514-10:57:39,691 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-4/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:57:39,694 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con7".
180514-10:57:39,702 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-4/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:39,702 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-4/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:40,571 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:57:40,885 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:57:41,303 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:57:41,634 workflow INFO:
[Job 122] Completed (_apply2con8).
180514-10:57:41,635 workflow INFO:
[Job 125] Completed (_apply2con2).
180514-10:57:41,637 workflow INFO:
[Job 126] Completed (_apply2con3).
180514-10:57:41,640 workflow INFO:
[MultiProc] Running 5 tasks, and 38 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con1
180514-10:57:41,691 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con".180514-10:57:41,693 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con8".
180514-10:57:41,698 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con0".180514-10:57:41,709 workflow INFO:
[Node] Finished "_apply2con1".180514-10:57:41,706 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-04/fwhm-4/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:41,715 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con0".
180514-10:57:41,720 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-8/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:41,725 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:57:41,745 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:57:41,751 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con1".
180514-10:57:41,758 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:57:41,771 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:57:41,781 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con2".
180514-10:57:41,791 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:57:41,801 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:57:41,809 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con3".
180514-10:57:41,826 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:57:41,839 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:57:41,851 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con4".
180514-10:57:41,860 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:57:41,879 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:57:41,893 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con5".
180514-10:57:41,905 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:57:41,917 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:57:41,929 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con6".
180514-10:57:41,944 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:57:41,964 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:57:41,974 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con7".
180514-10:57:41,987 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:57:41,999 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:57:42,17 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/apply2con/mapflow/_apply2con8".
180514-10:57:42,31 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:57:42,41 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:57:42,72 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:57:43,23 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:57:43,638 workflow INFO:
[Job 124] Completed (_apply2con1).
180514-10:57:43,640 workflow INFO:
[Job 127] Completed (_apply2con4).
180514-10:57:43,641 workflow INFO:
[Job 25] Completed (antsflow.apply2con).
180514-10:57:43,644 workflow INFO:
[MultiProc] Running 5 tasks, and 36 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
180514-10:57:43,697 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_04/datasink".
180514-10:57:43,699 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con1".
180514-10:57:43,701 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con2".
180514-10:57:43,710 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-8/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:43,716 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")180514-10:57:43,723 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-8/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:43,738 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_04/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm8/con_0001_trans.nii
180514-10:57:43,754 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_04/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm8/con_0002_trans.nii
180514-10:57:43,773 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_04/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm8/con_0003_trans.nii
180514-10:57:43,784 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_04/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm8/con_0004_trans.nii
180514-10:57:43,817 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_04/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm8/con_0005_trans.nii
180514-10:57:43,836 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_04/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm8/con_0006_trans.nii
180514-10:57:43,873 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_04/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm8/con_0007_trans.nii
180514-10:57:43,900 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_04/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm8/ess_0008_trans.nii
180514-10:57:43,929 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_04/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm8/ess_0009_trans.nii
180514-10:57:43,965 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:57:45,640 workflow INFO:
[Job 26] Completed (antsflow.datasink).
180514-10:57:45,644 workflow INFO:
[MultiProc] Running 7 tasks, and 33 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
180514-10:57:45,686 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con3".
180514-10:57:45,720 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-8/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:46,992 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:57:47,644 workflow INFO:
[Job 128] Completed (_apply2con5).
180514-10:57:47,659 workflow INFO:
[MultiProc] Running 7 tasks, and 32 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:57:47,719 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con4".
180514-10:57:47,750 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-8/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:48,848 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:57:49,648 workflow INFO:
[Job 130] Completed (_apply2con7).
180514-10:57:49,652 workflow INFO:
[MultiProc] Running 7 tasks, and 31 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con6
180514-10:57:49,727 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con5".
180514-10:57:49,756 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-8/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:50,101 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:57:51,652 workflow INFO:
[Job 129] Completed (_apply2con6).
180514-10:57:51,677 workflow INFO:
[MultiProc] Running 7 tasks, and 30 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
180514-10:57:51,733 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con6".
180514-10:57:51,760 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-8/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:52,774 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:57:52,905 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:57:53,656 workflow INFO:
[Job 131] Completed (_apply2con8).
180514-10:57:53,658 workflow INFO:
[Job 132] Completed (_apply2con0).
180514-10:57:53,661 workflow INFO:
[MultiProc] Running 6 tasks, and 30 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
180514-10:57:53,707 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con".180514-10:57:53,711 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con7".
180514-10:57:53,734 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con0".180514-10:57:53,744 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-8/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:53,754 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:57:53,769 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:57:53,783 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con1".
180514-10:57:53,793 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:57:53,803 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:57:53,830 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con2".
180514-10:57:53,890 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:57:53,916 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:57:53,950 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con3".
180514-10:57:53,974 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:57:54,9 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:57:54,43 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con4".
180514-10:57:54,70 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:57:54,88 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:57:54,119 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con5".
180514-10:57:54,171 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:57:54,192 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:57:54,223 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con6".
180514-10:57:54,246 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:57:54,268 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:57:54,290 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con7".
180514-10:57:54,331 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:57:54,360 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:57:54,380 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/apply2con/mapflow/_apply2con8".
180514-10:57:54,411 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:57:54,435 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:57:54,474 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:57:54,663 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:57:55,174 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:57:55,658 workflow INFO:
[Job 133] Completed (_apply2con1).
180514-10:57:55,659 workflow INFO:
[Job 134] Completed (_apply2con2).
180514-10:57:55,661 workflow INFO:
[Job 28] Completed (antsflow.apply2con).
180514-10:57:55,664 workflow INFO:
[MultiProc] Running 5 tasks, and 29 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
180514-10:57:55,712 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_04/datasink".
180514-10:57:55,717 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con0".180514-10:57:55,714 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con8".180514-10:57:55,726 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:57:55,744 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_04/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm4/con_0001_trans.nii180514-10:57:55,736 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-4/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:55,755 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_04/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm4/con_0002_trans.nii180514-10:57:55,748 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-8/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:55,773 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_04/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm4/con_0003_trans.nii
180514-10:57:55,786 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_04/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm4/con_0004_trans.nii
180514-10:57:55,804 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_04/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm4/con_0005_trans.nii
180514-10:57:55,821 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_04/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm4/con_0006_trans.nii
180514-10:57:55,836 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_04/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm4/con_0007_trans.nii
180514-10:57:55,845 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_04/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm4/ess_0008_trans.nii
180514-10:57:55,875 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_04/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-04_fwhm4/ess_0009_trans.nii
180514-10:57:55,922 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:57:56,185 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:57:57,660 workflow INFO:
[Job 135] Completed (_apply2con3).
180514-10:57:57,662 workflow INFO:
[Job 29] Completed (antsflow.datasink).
180514-10:57:57,666 workflow INFO:
[MultiProc] Running 6 tasks, and 26 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
180514-10:57:57,712 workflow INFO:
[Node] Finished "_apply2con5".180514-10:57:57,713 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con1".
180514-10:57:57,717 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con2".
180514-10:57:57,735 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-4/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:57:57,738 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-4/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:57:58,633 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:57:59,662 workflow INFO:
[Job 136] Completed (_apply2con4).
180514-10:57:59,664 workflow INFO:
[Job 137] Completed (_apply2con5).
180514-10:57:59,667 workflow INFO:
[MultiProc] Running 6 tasks, and 24 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:57:59,709 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con3".180514-10:57:59,712 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con4".
180514-10:57:59,736 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-4/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:57:59,744 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-4/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:01,666 workflow INFO:
[MultiProc] Running 8 tasks, and 22 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:58:03,488 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:58:03,666 workflow INFO:
[Job 138] Completed (_apply2con6).
180514-10:58:03,683 workflow INFO:
[MultiProc] Running 7 tasks, and 22 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
180514-10:58:03,752 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con5".
180514-10:58:03,798 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-4/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:04,909 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:58:05,554 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:58:05,670 workflow INFO:
[Job 139] Completed (_apply2con7).
180514-10:58:05,671 workflow INFO:
[Job 141] Completed (_apply2con0).
180514-10:58:05,675 workflow INFO:
[MultiProc] Running 6 tasks, and 21 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con8
180514-10:58:05,721 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con7".
180514-10:58:05,728 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-4/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:58:05,719 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con6".
180514-10:58:05,750 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-4/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:58:05,742 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:58:07,674 workflow INFO:
[Job 140] Completed (_apply2con8).
180514-10:58:07,701 workflow INFO:
[MultiProc] Running 7 tasks, and 20 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
180514-10:58:07,778 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con".
180514-10:58:07,835 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con0".
180514-10:58:07,863 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:58:07,879 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:58:07,878 workflow INFO:
[Node] Finished "_apply2con2".180514-10:58:07,891 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con1".
180514-10:58:07,907 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:58:07,913 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:58:07,926 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con2".
180514-10:58:07,937 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:58:07,941 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:58:07,949 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con3".
180514-10:58:07,962 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:58:07,973 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:58:07,993 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con4".
180514-10:58:08,7 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:58:08,11 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:58:08,24 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con5".
180514-10:58:08,35 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:58:08,44 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:58:08,55 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con6".
180514-10:58:08,69 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:58:08,79 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:58:08,98 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con7".
180514-10:58:08,110 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:58:08,121 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:58:08,132 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/apply2con/mapflow/_apply2con8".
180514-10:58:08,143 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:58:08,157 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:58:08,179 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:58:09,266 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:58:09,678 workflow INFO:
[Job 142] Completed (_apply2con1).
180514-10:58:09,679 workflow INFO:
[Job 143] Completed (_apply2con2).
180514-10:58:09,681 workflow INFO:
[Job 31] Completed (antsflow.apply2con).
180514-10:58:09,684 workflow INFO:
[MultiProc] Running 5 tasks, and 20 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
180514-10:58:09,733 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_03/datasink".180514-10:58:09,735 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con8".
180514-10:58:09,744 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:58:09,753 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con0".180514-10:58:09,750 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-03/fwhm-4/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:58:09,754 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_03/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm8/con_0001_trans.nii
180514-10:58:09,771 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_03/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm8/con_0002_trans.nii180514-10:58:09,773 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-8/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:09,788 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_03/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm8/con_0003_trans.nii
180514-10:58:09,806 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_03/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm8/con_0004_trans.nii
180514-10:58:09,815 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_03/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm8/con_0005_trans.nii
180514-10:58:09,829 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_03/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm8/con_0006_trans.nii
180514-10:58:09,854 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_03/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm8/con_0007_trans.nii
180514-10:58:09,861 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_03/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm8/ess_0008_trans.nii
180514-10:58:09,888 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_03/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm8/ess_0009_trans.nii
180514-10:58:09,922 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:58:09,997 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:58:10,886 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:58:11,694 workflow INFO:
[Job 144] Completed (_apply2con3).
180514-10:58:11,696 workflow INFO:
[Job 145] Completed (_apply2con4).
180514-10:58:11,697 workflow INFO:
[Job 32] Completed (antsflow.datasink).
180514-10:58:11,700 workflow INFO:
[MultiProc] Running 5 tasks, and 17 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
* _apply2con5
180514-10:58:11,743 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con1".
180514-10:58:11,745 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con2".180514-10:58:11,749 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con3".
180514-10:58:11,765 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-8/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:58:11,760 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-8/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:11,770 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-8/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:12,977 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:58:13,698 workflow INFO:
[Job 148] Completed (_apply2con7).
180514-10:58:13,702 workflow INFO:
[MultiProc] Running 7 tasks, and 14 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con6
* _apply2con5
180514-10:58:13,806 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con4".
180514-10:58:13,836 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-8/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:15,403 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:58:15,702 workflow INFO:
[Job 146] Completed (_apply2con5).
180514-10:58:15,718 workflow INFO:
[MultiProc] Running 7 tasks, and 13 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con6
180514-10:58:15,773 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con5".
180514-10:58:15,809 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-8/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:17,89 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:58:17,706 workflow INFO:
[Job 147] Completed (_apply2con6).
180514-10:58:17,710 workflow INFO:
[MultiProc] Running 7 tasks, and 12 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
180514-10:58:17,784 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con6".
180514-10:58:17,814 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-8/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:19,711 workflow INFO:
[MultiProc] Running 8 tasks, and 11 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
180514-10:58:21,79 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:58:21,84 workflow INFO:
[Node] Finished "_apply2con0".
180514-10:58:21,713 workflow INFO:
[Job 149] Completed (_apply2con8).
180514-10:58:21,715 workflow INFO:
[Job 150] Completed (_apply2con0).
180514-10:58:21,719 workflow INFO:
[MultiProc] Running 6 tasks, and 12 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
180514-10:58:21,783 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con".180514-10:58:21,790 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con7".
180514-10:58:21,804 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con0".
180514-10:58:21,810 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:58:21,817 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-8/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:21,826 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:58:21,847 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con1".
180514-10:58:21,858 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:58:21,868 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:58:21,890 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con2".
180514-10:58:21,901 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:58:21,927 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:58:21,957 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con3".
180514-10:58:21,972 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:58:21,997 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:58:22,35 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con4".
180514-10:58:22,57 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:58:22,68 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:58:22,85 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con5".
180514-10:58:22,95 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:58:22,131 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:58:22,163 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con6".
180514-10:58:22,194 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:58:22,212 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:58:22,239 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con7".
180514-10:58:22,267 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:58:22,292 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:58:22,326 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/apply2con/mapflow/_apply2con8".
180514-10:58:22,359 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:58:22,376 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:58:22,438 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:58:22,743 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:58:22,851 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:58:23,722 workflow INFO:
[Job 151] Completed (_apply2con1).
180514-10:58:23,725 workflow INFO:
[Job 152] Completed (_apply2con2).
180514-10:58:23,726 workflow INFO:
[Job 34] Completed (antsflow.apply2con).
180514-10:58:23,731 workflow INFO:
[MultiProc] Running 5 tasks, and 11 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
180514-10:58:23,800 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_03/datasink".
180514-10:58:23,802 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con8".
180514-10:58:23,807 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con0".
180514-10:58:23,818 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:58:23,830 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_03/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm4/con_0001_trans.nii
180514-10:58:23,833 workflow INFO:
[Node] Running "_apply2con0" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-4/con_0001.nii --input-image-type 3 --interpolation BSpline --output con_0001_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:58:23,837 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_03/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm4/con_0002_trans.nii
180514-10:58:23,842 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_03/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm4/con_0003_trans.nii
180514-10:58:23,846 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_03/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm4/con_0004_trans.nii180514-10:58:23,824 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-8/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:23,852 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_03/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm4/con_0005_trans.nii
180514-10:58:23,868 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_03/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm4/con_0006_trans.nii
180514-10:58:23,883 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_03/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm4/con_0007_trans.nii
180514-10:58:23,904 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_03/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm4/ess_0008_trans.nii
180514-10:58:23,932 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_03/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-03_fwhm4/ess_0009_trans.nii
180514-10:58:23,957 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:58:24,23 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:58:24,455 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:58:25,723 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:58:25,728 workflow INFO:
[Job 153] Completed (_apply2con3).
180514-10:58:25,731 workflow INFO:
[Job 154] Completed (_apply2con4).
180514-10:58:25,733 workflow INFO:
[Job 155] Completed (_apply2con5).
180514-10:58:25,736 workflow INFO:
[Job 35] Completed (antsflow.datasink).
180514-10:58:25,740 workflow INFO:
[MultiProc] Running 4 tasks, and 8 jobs ready. Free memory (GB): 53.14/53.94, Free processors: 4/8.
Currently running:
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:58:25,797 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con1".
180514-10:58:25,801 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con2".180514-10:58:25,807 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con3".
180514-10:58:25,803 workflow INFO:
[Node] Running "_apply2con1" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-4/con_0002.nii --input-image-type 3 --interpolation BSpline --output con_0002_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:25,817 workflow INFO:
[Node] Running "_apply2con2" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-4/con_0003.nii --input-image-type 3 --interpolation BSpline --output con_0003_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]180514-10:58:25,817 workflow INFO:
[Node] Running "_apply2con3" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-4/con_0004.nii --input-image-type 3 --interpolation BSpline --output con_0004_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:25,832 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con4".
180514-10:58:25,873 workflow INFO:
[Node] Running "_apply2con4" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-4/con_0005.nii --input-image-type 3 --interpolation BSpline --output con_0005_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:27,730 workflow INFO:
[MultiProc] Running 8 tasks, and 4 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:58:28,290 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:58:29,730 workflow INFO:
[Job 156] Completed (_apply2con6).
180514-10:58:29,764 workflow INFO:
[MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
180514-10:58:29,831 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con5".
180514-10:58:29,865 workflow INFO:
[Node] Running "_apply2con5" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-4/con_0006.nii --input-image-type 3 --interpolation BSpline --output con_0006_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:31,735 workflow INFO:
[MultiProc] Running 8 tasks, and 3 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
* _apply2con7
180514-10:58:31,828 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:58:33,734 workflow INFO:
[Job 157] Completed (_apply2con7).
180514-10:58:33,756 workflow INFO:
[MultiProc] Running 7 tasks, and 3 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
* _apply2con0
* _apply2con8
180514-10:58:33,824 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con6".
180514-10:58:33,861 workflow INFO:
[Node] Running "_apply2con6" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-4/con_0007.nii --input-image-type 3 --interpolation BSpline --output con_0007_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:34,750 workflow INFO:
[Node] Finished "_apply2con0".180514-10:58:34,765 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:58:35,740 workflow INFO:
[Job 158] Completed (_apply2con8).
180514-10:58:35,741 workflow INFO:
[Job 159] Completed (_apply2con0).
180514-10:58:35,745 workflow INFO:
[MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* _apply2con6
* _apply2con5
* _apply2con4
* _apply2con3
* _apply2con2
* _apply2con1
180514-10:58:35,794 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con7".180514-10:58:35,794 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con".
180514-10:58:35,824 workflow INFO:
[Node] Running "_apply2con7" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-4/ess_0008.nii --input-image-type 3 --interpolation BSpline --output ess_0008_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:35,820 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con0".
180514-10:58:35,851 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:58:35,869 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:58:35,899 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con1".
180514-10:58:35,922 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:58:35,963 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:58:35,981 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con2".
180514-10:58:36,3 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:58:36,36 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:58:36,57 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con3".
180514-10:58:36,79 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:58:36,93 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:58:36,118 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con4".
180514-10:58:36,154 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:58:36,187 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:58:36,216 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con5".
180514-10:58:36,253 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:58:36,304 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:58:36,337 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con6".
180514-10:58:36,379 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:58:36,396 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:58:36,426 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con7".
180514-10:58:36,454 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:58:36,482 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:58:36,514 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/apply2con/mapflow/_apply2con8".
180514-10:58:36,534 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:58:36,559 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:58:36,594 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:58:37,102 workflow INFO:
[Node] Finished "_apply2con2".
180514-10:58:37,543 workflow INFO:
[Node] Finished "_apply2con4".
180514-10:58:37,603 workflow INFO:
[Node] Finished "_apply2con1".
180514-10:58:37,744 workflow INFO:
[Job 160] Completed (_apply2con1).
180514-10:58:37,747 workflow INFO:
[Job 161] Completed (_apply2con2).
180514-10:58:37,748 workflow INFO:
[Job 163] Completed (_apply2con4).
180514-10:58:37,749 workflow INFO:
[Job 37] Completed (antsflow.apply2con).
180514-10:58:37,754 workflow INFO:
[MultiProc] Running 4 tasks, and 2 jobs ready. Free memory (GB): 53.14/53.94, Free processors: 4/8.
Currently running:
* _apply2con7
* _apply2con6
* _apply2con5
* _apply2con3
180514-10:58:37,820 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_8_subject_id_02/datasink".180514-10:58:37,821 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con8".
180514-10:58:37,828 workflow INFO:
[Node] Running "_apply2con8" ("nipype.interfaces.ants.resampling.ApplyTransforms"), a CommandLine Interface with command:
antsApplyTransforms --float --default-value 0 --float 0 --input /output/datasink/1stLevel/sub-02/fwhm-4/ess_0009.nii --input-image-type 3 --interpolation BSpline --output ess_0009_trans.nii --reference-image /data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz --transform [ /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_warp.h5, 0 ]
180514-10:58:37,837 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:58:37,843 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_02/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm8/con_0001_trans.nii
180514-10:58:37,850 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_02/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm8/con_0002_trans.nii
180514-10:58:37,857 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_02/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm8/con_0003_trans.nii
180514-10:58:37,865 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_02/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm8/con_0004_trans.nii
180514-10:58:37,877 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_02/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm8/con_0005_trans.nii
180514-10:58:37,881 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_02/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm8/con_0006_trans.nii
180514-10:58:37,884 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_02/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm8/con_0007_trans.nii
180514-10:58:37,894 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_02/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm8/ess_0008_trans.nii
180514-10:58:37,907 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_8_subject_id_02/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm8/ess_0009_trans.nii
180514-10:58:37,922 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:58:37,977 workflow INFO:
[Node] Finished "_apply2con3".
180514-10:58:38,433 workflow INFO:
[Node] Finished "_apply2con5".
180514-10:58:39,746 workflow INFO:
[Job 162] Completed (_apply2con3).
180514-10:58:39,748 workflow INFO:
[Job 164] Completed (_apply2con5).
180514-10:58:39,750 workflow INFO:
[Job 38] Completed (antsflow.datasink).
180514-10:58:39,753 workflow INFO:
[MultiProc] Running 3 tasks, and 0 jobs ready. Free memory (GB): 53.34/53.94, Free processors: 5/8.
Currently running:
* _apply2con8
* _apply2con7
* _apply2con6
180514-10:58:43,487 workflow INFO:
[Node] Finished "_apply2con6".
180514-10:58:43,579 workflow INFO:
[Node] Finished "_apply2con7".
180514-10:58:43,749 workflow INFO:
[Job 165] Completed (_apply2con6).
180514-10:58:43,750 workflow INFO:
[Job 166] Completed (_apply2con7).
180514-10:58:43,753 workflow INFO:
[MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 53.74/53.94, Free processors: 7/8.
Currently running:
* _apply2con8
180514-10:58:44,32 workflow INFO:
[Node] Finished "_apply2con8".
180514-10:58:45,756 workflow INFO:
[Job 167] Completed (_apply2con8).
180514-10:58:45,759 workflow INFO:
[MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
180514-10:58:45,816 workflow INFO:
[Node] Setting-up "antsflow.apply2con" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con".
180514-10:58:45,823 workflow INFO:
[Node] Setting-up "_apply2con0" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con0".
180514-10:58:45,828 workflow INFO:
[Node] Cached "_apply2con0" - collecting precomputed outputs
180514-10:58:45,831 workflow INFO:
[Node] "_apply2con0" found cached.
180514-10:58:45,836 workflow INFO:
[Node] Setting-up "_apply2con1" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con1".
180514-10:58:45,841 workflow INFO:
[Node] Cached "_apply2con1" - collecting precomputed outputs
180514-10:58:45,843 workflow INFO:
[Node] "_apply2con1" found cached.
180514-10:58:45,847 workflow INFO:
[Node] Setting-up "_apply2con2" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con2".
180514-10:58:45,852 workflow INFO:
[Node] Cached "_apply2con2" - collecting precomputed outputs
180514-10:58:45,855 workflow INFO:
[Node] "_apply2con2" found cached.
180514-10:58:45,858 workflow INFO:
[Node] Setting-up "_apply2con3" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con3".
180514-10:58:45,862 workflow INFO:
[Node] Cached "_apply2con3" - collecting precomputed outputs
180514-10:58:45,865 workflow INFO:
[Node] "_apply2con3" found cached.
180514-10:58:45,869 workflow INFO:
[Node] Setting-up "_apply2con4" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con4".
180514-10:58:45,874 workflow INFO:
[Node] Cached "_apply2con4" - collecting precomputed outputs
180514-10:58:45,877 workflow INFO:
[Node] "_apply2con4" found cached.
180514-10:58:45,880 workflow INFO:
[Node] Setting-up "_apply2con5" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con5".
180514-10:58:45,886 workflow INFO:
[Node] Cached "_apply2con5" - collecting precomputed outputs
180514-10:58:45,889 workflow INFO:
[Node] "_apply2con5" found cached.
180514-10:58:45,893 workflow INFO:
[Node] Setting-up "_apply2con6" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con6".
180514-10:58:45,897 workflow INFO:
[Node] Cached "_apply2con6" - collecting precomputed outputs
180514-10:58:45,900 workflow INFO:
[Node] "_apply2con6" found cached.
180514-10:58:45,904 workflow INFO:
[Node] Setting-up "_apply2con7" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con7".
180514-10:58:45,908 workflow INFO:
[Node] Cached "_apply2con7" - collecting precomputed outputs
180514-10:58:45,911 workflow INFO:
[Node] "_apply2con7" found cached.
180514-10:58:45,916 workflow INFO:
[Node] Setting-up "_apply2con8" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/apply2con/mapflow/_apply2con8".
180514-10:58:45,921 workflow INFO:
[Node] Cached "_apply2con8" - collecting precomputed outputs
180514-10:58:45,924 workflow INFO:
[Node] "_apply2con8" found cached.
180514-10:58:45,940 workflow INFO:
[Node] Finished "antsflow.apply2con".
180514-10:58:47,756 workflow INFO:
[Job 40] Completed (antsflow.apply2con).
180514-10:58:47,764 workflow INFO:
[MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
180514-10:58:47,807 workflow INFO:
[Node] Setting-up "antsflow.datasink" in "/output/workingdir/antsflow/_fwhm_id_4_subject_id_02/datasink".
180514-10:58:47,816 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-10:58:47,820 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_02/_apply2con0/con_0001_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm4/con_0001_trans.nii
180514-10:58:47,824 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_02/_apply2con1/con_0002_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm4/con_0002_trans.nii
180514-10:58:47,827 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_02/_apply2con2/con_0003_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm4/con_0003_trans.nii
180514-10:58:47,830 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_02/_apply2con3/con_0004_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm4/con_0004_trans.nii
180514-10:58:47,833 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_02/_apply2con4/con_0005_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm4/con_0005_trans.nii
180514-10:58:47,835 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_02/_apply2con5/con_0006_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm4/con_0006_trans.nii
180514-10:58:47,838 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_02/_apply2con6/con_0007_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm4/con_0007_trans.nii
180514-10:58:47,841 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_02/_apply2con7/ess_0008_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm4/ess_0008_trans.nii
180514-10:58:47,844 interface INFO:
sub: /output/datasink/norm_ants/_fwhm_id_4_subject_id_02/_apply2con8/ess_0009_trans.nii -> /output/datasink/norm_ants/sub-02_fwhm4/ess_0009_trans.nii
180514-10:58:47,851 workflow INFO:
[Node] Finished "antsflow.datasink".
180514-10:58:49,758 workflow INFO:
[Job 41] Completed (antsflow.datasink).
180514-10:58:49,766 workflow INFO:
[MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
Out[ ]:
<networkx.classes.digraph.DiGraph at 0x7fef25c0d0b8>
Normalization with SPM12¶
The normalization with SPM12 is rather straight forward. The only thing we need to do is run the Normalize12 module. So let's start!
Imports (SPM12)¶
First, we need to import all modules we later want to use.
In [ ]:
from os.path import join as opj
from nipype.interfaces.spm import Normalize12
from nipype.interfaces.utility import IdentityInterface
from nipype.interfaces.io import SelectFiles, DataSink
from nipype.algorithms.misc import Gunzip
from nipype import Workflow, Node
Experiment parameters (SPM12)¶
It's always a good idea to specify all parameters that might change between experiments at the beginning of your script. And remember that we decided to run the group analysis without subject sub-01, sub-06 and sub-10 because they are left handed (see this section).
In [ ]:
experiment_dir = '/output'
output_dir = 'datasink'
working_dir = 'workingdir'
# list of subject identifiers
subject_list = ['02', '03', '04', '05', '07', '08', '09']
# task name
task_name = "fingerfootlips"
# Smoothing withds used during preprocessing
fwhm = [4, 8]
template = '/opt/spm12-r7219/spm12_mcr/spm12/tpm/TPM.nii'
Specify Nodes (SPM12)¶
Initiate all the different interfaces (represented as nodes) that you want to use in your workflow.
In [ ]:
# Gunzip - unzip the anatomical image
gunzip = Node(Gunzip(), name="gunzip")
# Normalize - normalizes functional and structural images to the MNI template
normalize = Node(Normalize12(jobtype='estwrite',
tpm=template,
write_voxel_sizes=[1, 1, 1]),
name="normalize")
Specify input & output stream (SPM12)¶
Specify where the input data can be found & where and how to save the output data.
In [ ]:
# Infosource - a function free node to iterate over the list of subject names
infosource = Node(IdentityInterface(fields=['subject_id', 'fwhm_id']),
name="infosource")
infosource.iterables = [('subject_id', subject_list),
('fwhm_id', fwhm)]
# SelectFiles - to grab the data (alternativ to DataGrabber)
templates = {'con': opj(output_dir, '1stLevel',
'sub-{subject_id}/fwhm-{fwhm_id}', '???_00??.nii'),
'anat': opj('/data/ds000114/derivatives', 'fmriprep', 'sub-{subject_id}',
'anat', 'sub-{subject_id}_t1w_preproc.nii.gz')}
selectfiles = Node(SelectFiles(templates,
base_directory=experiment_dir,
sort_filelist=True),
name="selectfiles")
# Datasink - creates output folder for important outputs
datasink = Node(DataSink(base_directory=experiment_dir,
container=output_dir),
name="datasink")
# Use the following DataSink output substitutions
substitutions = [('_subject_id_', 'sub-')]
subjFolders = [('_fwhm_id_%ssub-%s' % (f, sub), 'sub-%s_fwhm%s' % (sub, f))
for f in fwhm
for sub in subject_list]
substitutions.extend(subjFolders)
datasink.inputs.substitutions = substitutions
Specify Workflow (SPM12)¶
Create a workflow and connect the interface nodes and the I/O stream to each other.
In [ ]:
# Specify Normalization-Workflow & Connect Nodes
spmflow = Workflow(name='spmflow')
spmflow.base_dir = opj(experiment_dir, working_dir)
# Connect up SPM normalization components
spmflow.connect([(infosource, selectfiles, [('subject_id', 'subject_id'),
('fwhm_id', 'fwhm_id')]),
(selectfiles, normalize, [('con', 'apply_to_files')]),
(selectfiles, gunzip, [('anat', 'in_file')]),
(gunzip, normalize, [('out_file', 'image_to_align')]),
(normalize, datasink, [('normalized_files', 'norm_spm.@files'),
('normalized_image', 'norm_spm.@image'),
]),
])
Visualize the workflow (SPM12)¶
It always helps to visualize your workflow.
In [ ]:
# Create SPM normalization graph
spmflow.write_graph(graph2use='colored', format='png', simple_form=True)
# Visualize the graph
from IPython.display import Image
Image(filename=opj(spmflow.base_dir, 'spmflow', 'graph.png'))
180514-10:58:52,195 workflow INFO: Generated workflow graph: /output/workingdir/spmflow/graph.png (graph2use=colored, simple_form=True).
Out[ ]:
Run the Workflow (SPM12)¶
Now that everything is ready, we can run the SPM normalization workflow. Change n_procs to the number of jobs/cores you want to use.
In [ ]:
spmflow.run('MultiProc', plugin_args={'n_procs': 8})
180514-10:58:52,249 workflow INFO:
Workflow spmflow settings: ['check', 'execution', 'logging', 'monitoring']
180514-10:58:52,315 workflow INFO:
Running in parallel.
180514-10:58:52,320 workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
180514-10:58:52,378 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_09/selectfiles".180514-10:58:52,378 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_09/selectfiles".
180514-10:58:52,381 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_08/selectfiles".
180514-10:58:52,383 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_08/selectfiles".180514-10:58:52,387 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:58:52,387 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:58:52,390 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:58:52,390 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_07/selectfiles".180514-10:58:52,393 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_05/selectfiles".
180514-10:58:52,404 workflow INFO:
[Node] Finished "spmflow.selectfiles".180514-10:58:52,387 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_07/selectfiles".180514-10:58:52,397 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_05/selectfiles".
180514-10:58:52,406 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-10:58:52,394 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:58:52,408 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-10:58:52,416 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:58:52,414 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:58:52,417 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:58:52,422 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-10:58:52,432 workflow INFO:
[Node] Finished "spmflow.selectfiles".180514-10:58:52,431 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-10:58:52,434 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-10:58:52,438 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-10:58:52,445 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-10:58:54,323 workflow INFO:
[Job 0] Completed (spmflow.selectfiles).
180514-10:58:54,327 workflow INFO:
[Job 4] Completed (spmflow.selectfiles).
180514-10:58:54,329 workflow INFO:
[Job 8] Completed (spmflow.selectfiles).
180514-10:58:54,331 workflow INFO:
[Job 12] Completed (spmflow.selectfiles).
180514-10:58:54,332 workflow INFO:
[Job 16] Completed (spmflow.selectfiles).
180514-10:58:54,334 workflow INFO:
[Job 20] Completed (spmflow.selectfiles).
180514-10:58:54,336 workflow INFO:
[Job 24] Completed (spmflow.selectfiles).
180514-10:58:54,338 workflow INFO:
[Job 28] Completed (spmflow.selectfiles).
180514-10:58:54,341 workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
180514-10:58:54,387 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_09/gunzip".180514-10:58:54,389 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_09/gunzip".
180514-10:58:54,391 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_08/gunzip".
180514-10:58:54,393 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_08/gunzip".180514-10:58:54,393 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")180514-10:58:54,394 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")
180514-10:58:54,401 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_07/gunzip".180514-10:58:54,403 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_07/gunzip".
180514-10:58:54,397 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")180514-10:58:54,408 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")
180514-10:58:54,400 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")180514-10:58:54,410 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_05/gunzip".180514-10:58:54,408 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_05/gunzip".
180514-10:58:54,437 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")180514-10:58:54,437 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")180514-10:58:54,429 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")
180514-10:58:55,314 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-10:58:55,343 workflow INFO:
[Node] Finished "spmflow.gunzip".180514-10:58:55,346 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-10:58:55,373 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-10:58:55,377 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-10:58:55,384 workflow INFO:
[Node] Finished "spmflow.gunzip".180514-10:58:55,390 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-10:58:55,413 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-10:58:56,325 workflow INFO:
[Job 1] Completed (spmflow.gunzip).
180514-10:58:56,331 workflow INFO:
[Job 5] Completed (spmflow.gunzip).
180514-10:58:56,336 workflow INFO:
[Job 9] Completed (spmflow.gunzip).
180514-10:58:56,342 workflow INFO:
[Job 13] Completed (spmflow.gunzip).
180514-10:58:56,347 workflow INFO:
[Job 17] Completed (spmflow.gunzip).
180514-10:58:56,352 workflow INFO:
[Job 21] Completed (spmflow.gunzip).
180514-10:58:56,358 workflow INFO:
[Job 25] Completed (spmflow.gunzip).
180514-10:58:56,364 workflow INFO:
[Job 29] Completed (spmflow.gunzip).
180514-10:58:56,369 workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
180514-10:58:56,418 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_09/normalize".
180514-10:58:56,426 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_09/normalize".
180514-10:58:56,430 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_08/normalize".
180514-10:58:56,439 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_08/normalize".
180514-10:58:56,445 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_07/normalize".
180514-10:58:56,452 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_07/normalize".
180514-10:58:56,457 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_05/normalize".
180514-10:58:56,462 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_05/normalize".
180514-10:58:56,579 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")
180514-10:58:56,594 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")180514-10:58:56,594 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")180514-10:58:56,595 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")180514-10:58:56,584 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")180514-10:58:56,596 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")
180514-10:58:56,599 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")
180514-10:58:56,595 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")
180514-10:58:58,327 workflow INFO:
[MultiProc] Running 8 tasks, and 6 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:04:06,656 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:04:08,632 workflow INFO:
[Job 18] Completed (spmflow.normalize).
180514-11:04:08,638 workflow INFO:
[MultiProc] Running 7 tasks, and 7 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:04:08,692 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_07/datasink".
180514-11:04:08,734 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:04:08,771 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_07/wcon_0001.nii -> /output/datasink/norm_spm/sub-07_fwhm8/wcon_0001.nii
180514-11:04:08,798 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_07/wcon_0002.nii -> /output/datasink/norm_spm/sub-07_fwhm8/wcon_0002.nii
180514-11:04:08,823 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_07/wcon_0003.nii -> /output/datasink/norm_spm/sub-07_fwhm8/wcon_0003.nii
180514-11:04:08,859 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_07/wcon_0004.nii -> /output/datasink/norm_spm/sub-07_fwhm8/wcon_0004.nii
180514-11:04:08,869 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_07/wcon_0005.nii -> /output/datasink/norm_spm/sub-07_fwhm8/wcon_0005.nii
180514-11:04:08,905 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_07/wcon_0006.nii -> /output/datasink/norm_spm/sub-07_fwhm8/wcon_0006.nii
180514-11:04:08,933 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_07/wcon_0007.nii -> /output/datasink/norm_spm/sub-07_fwhm8/wcon_0007.nii
180514-11:04:08,962 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_07/wess_0008.nii -> /output/datasink/norm_spm/sub-07_fwhm8/wess_0008.nii
180514-11:04:08,998 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_07/wess_0009.nii -> /output/datasink/norm_spm/sub-07_fwhm8/wess_0009.nii
180514-11:04:09,25 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_07/wsub-07_t1w_preproc.nii -> /output/datasink/norm_spm/sub-07_fwhm8/wsub-07_t1w_preproc.nii
180514-11:04:09,62 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:04:10,636 workflow INFO:
[Job 19] Completed (spmflow.datasink).
180514-11:04:10,639 workflow INFO:
[MultiProc] Running 7 tasks, and 6 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:04:10,684 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_04/selectfiles".
180514-11:04:10,696 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-11:04:10,710 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-11:04:11,455 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:04:12,640 workflow INFO:
[Job 22] Completed (spmflow.normalize).
180514-11:04:12,642 workflow INFO:
[Job 32] Completed (spmflow.selectfiles).
180514-11:04:12,646 workflow INFO:
[MultiProc] Running 6 tasks, and 7 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:04:12,700 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_07/datasink".180514-11:04:12,703 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_04/gunzip".
180514-11:04:12,726 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:04:12,729 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")
180514-11:04:12,742 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_07/wcon_0001.nii -> /output/datasink/norm_spm/sub-07_fwhm4/wcon_0001.nii
180514-11:04:12,765 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_07/wcon_0002.nii -> /output/datasink/norm_spm/sub-07_fwhm4/wcon_0002.nii
180514-11:04:12,797 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_07/wcon_0003.nii -> /output/datasink/norm_spm/sub-07_fwhm4/wcon_0003.nii
180514-11:04:12,821 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_07/wcon_0004.nii -> /output/datasink/norm_spm/sub-07_fwhm4/wcon_0004.nii
180514-11:04:12,848 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_07/wcon_0005.nii -> /output/datasink/norm_spm/sub-07_fwhm4/wcon_0005.nii
180514-11:04:12,880 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_07/wcon_0006.nii -> /output/datasink/norm_spm/sub-07_fwhm4/wcon_0006.nii
180514-11:04:12,905 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_07/wcon_0007.nii -> /output/datasink/norm_spm/sub-07_fwhm4/wcon_0007.nii
180514-11:04:12,930 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_07/wess_0008.nii -> /output/datasink/norm_spm/sub-07_fwhm4/wess_0008.nii
180514-11:04:12,953 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_07/wess_0009.nii -> /output/datasink/norm_spm/sub-07_fwhm4/wess_0009.nii
180514-11:04:12,973 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_07/wsub-07_t1w_preproc.nii -> /output/datasink/norm_spm/sub-07_fwhm4/wsub-07_t1w_preproc.nii
180514-11:04:13,9 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:04:13,554 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-11:04:14,644 workflow INFO:
[Job 23] Completed (spmflow.datasink).
180514-11:04:14,646 workflow INFO:
[Job 33] Completed (spmflow.gunzip).
180514-11:04:14,650 workflow INFO:
[MultiProc] Running 6 tasks, and 6 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:04:14,697 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_04/normalize".180514-11:04:14,700 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_04/selectfiles".
180514-11:04:14,719 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-11:04:14,734 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-11:04:14,787 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")
180514-11:04:16,646 workflow INFO:
[Job 36] Completed (spmflow.selectfiles).
180514-11:04:16,663 workflow INFO:
[MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:04:16,719 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_04/gunzip".
180514-11:04:16,741 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")
180514-11:04:17,585 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-11:04:18,649 workflow INFO:
[Job 37] Completed (spmflow.gunzip).
180514-11:04:18,671 workflow INFO:
[MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:04:18,741 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_04/normalize".
180514-11:04:18,823 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")
180514-11:04:20,655 workflow INFO:
[MultiProc] Running 8 tasks, and 4 jobs ready. Free memory (GB): 52.34/53.94, Free processors: 0/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:04:53,602 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:04:54,687 workflow INFO:
[Job 6] Completed (spmflow.normalize).
180514-11:04:54,693 workflow INFO:
[MultiProc] Running 7 tasks, and 5 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:04:54,755 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_09/datasink".
180514-11:04:54,791 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:04:54,817 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_09/wcon_0001.nii -> /output/datasink/norm_spm/sub-09_fwhm4/wcon_0001.nii
180514-11:04:54,841 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_09/wcon_0002.nii -> /output/datasink/norm_spm/sub-09_fwhm4/wcon_0002.nii
180514-11:04:54,878 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_09/wcon_0003.nii -> /output/datasink/norm_spm/sub-09_fwhm4/wcon_0003.nii
180514-11:04:54,898 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_09/wcon_0004.nii -> /output/datasink/norm_spm/sub-09_fwhm4/wcon_0004.nii
180514-11:04:54,914 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_09/wcon_0005.nii -> /output/datasink/norm_spm/sub-09_fwhm4/wcon_0005.nii
180514-11:04:54,951 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_09/wcon_0006.nii -> /output/datasink/norm_spm/sub-09_fwhm4/wcon_0006.nii
180514-11:04:54,966 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_09/wcon_0007.nii -> /output/datasink/norm_spm/sub-09_fwhm4/wcon_0007.nii
180514-11:04:55,5 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_09/wess_0008.nii -> /output/datasink/norm_spm/sub-09_fwhm4/wess_0008.nii
180514-11:04:55,27 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_09/wess_0009.nii -> /output/datasink/norm_spm/sub-09_fwhm4/wess_0009.nii
180514-11:04:55,51 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_09/wsub-09_t1w_preproc.nii -> /output/datasink/norm_spm/sub-09_fwhm4/wsub-09_t1w_preproc.nii
180514-11:04:55,65 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:04:56,692 workflow INFO:
[Job 7] Completed (spmflow.datasink).
180514-11:04:56,699 workflow INFO:
[MultiProc] Running 7 tasks, and 4 jobs ready. Free memory (GB): 52.54/53.94, Free processors: 1/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:04:56,771 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_03/selectfiles".
180514-11:04:56,808 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-11:04:56,826 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-11:04:57,980 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:04:58,696 workflow INFO:
[Job 14] Completed (spmflow.normalize).
180514-11:04:58,702 workflow INFO:
[Job 40] Completed (spmflow.selectfiles).
180514-11:04:58,708 workflow INFO:
[MultiProc] Running 6 tasks, and 5 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:04:58,770 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_03/gunzip".180514-11:04:58,767 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_08/datasink".
180514-11:04:58,796 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")180514-11:04:58,790 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")
180514-11:04:58,811 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_08/wcon_0001.nii -> /output/datasink/norm_spm/sub-08_fwhm4/wcon_0001.nii
180514-11:04:58,837 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_08/wcon_0002.nii -> /output/datasink/norm_spm/sub-08_fwhm4/wcon_0002.nii
180514-11:04:58,870 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_08/wcon_0003.nii -> /output/datasink/norm_spm/sub-08_fwhm4/wcon_0003.nii
180514-11:04:58,913 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_08/wcon_0004.nii -> /output/datasink/norm_spm/sub-08_fwhm4/wcon_0004.nii
180514-11:04:58,941 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_08/wcon_0005.nii -> /output/datasink/norm_spm/sub-08_fwhm4/wcon_0005.nii
180514-11:04:58,977 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_08/wcon_0006.nii -> /output/datasink/norm_spm/sub-08_fwhm4/wcon_0006.nii
180514-11:04:59,5 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_08/wcon_0007.nii -> /output/datasink/norm_spm/sub-08_fwhm4/wcon_0007.nii
180514-11:04:59,38 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_08/wess_0008.nii -> /output/datasink/norm_spm/sub-08_fwhm4/wess_0008.nii
180514-11:04:59,69 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_08/wess_0009.nii -> /output/datasink/norm_spm/sub-08_fwhm4/wess_0009.nii
180514-11:04:59,97 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_08/wsub-08_t1w_preproc.nii -> /output/datasink/norm_spm/sub-08_fwhm4/wsub-08_t1w_preproc.nii
180514-11:04:59,134 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:04:59,694 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-11:05:00,700 workflow INFO:
[Job 15] Completed (spmflow.datasink).
180514-11:05:00,702 workflow INFO:
[Job 41] Completed (spmflow.gunzip).
180514-11:05:00,705 workflow INFO:
[MultiProc] Running 6 tasks, and 4 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:05:00,766 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_03/selectfiles".180514-11:05:00,764 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_03/normalize".
180514-11:05:00,795 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-11:05:00,810 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-11:05:00,837 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")
180514-11:05:01,640 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:05:02,704 workflow INFO:
[Job 26] Completed (spmflow.normalize).
180514-11:05:02,706 workflow INFO:
[Job 44] Completed (spmflow.selectfiles).
180514-11:05:02,710 workflow INFO:
[MultiProc] Running 6 tasks, and 4 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:05:02,769 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_05/datasink".180514-11:05:02,772 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_03/gunzip".
180514-11:05:02,804 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")180514-11:05:02,800 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:05:02,825 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_05/wcon_0001.nii -> /output/datasink/norm_spm/sub-05_fwhm8/wcon_0001.nii
180514-11:05:02,831 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_05/wcon_0002.nii -> /output/datasink/norm_spm/sub-05_fwhm8/wcon_0002.nii
180514-11:05:02,842 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_05/wcon_0003.nii -> /output/datasink/norm_spm/sub-05_fwhm8/wcon_0003.nii
180514-11:05:02,853 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_05/wcon_0004.nii -> /output/datasink/norm_spm/sub-05_fwhm8/wcon_0004.nii
180514-11:05:02,870 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_05/wcon_0005.nii -> /output/datasink/norm_spm/sub-05_fwhm8/wcon_0005.nii
180514-11:05:02,897 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_05/wcon_0006.nii -> /output/datasink/norm_spm/sub-05_fwhm8/wcon_0006.nii
180514-11:05:02,921 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_05/wcon_0007.nii -> /output/datasink/norm_spm/sub-05_fwhm8/wcon_0007.nii
180514-11:05:02,945 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_05/wess_0008.nii -> /output/datasink/norm_spm/sub-05_fwhm8/wess_0008.nii
180514-11:05:02,965 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_05/wess_0009.nii -> /output/datasink/norm_spm/sub-05_fwhm8/wess_0009.nii
180514-11:05:02,987 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_05/wsub-05_t1w_preproc.nii -> /output/datasink/norm_spm/sub-05_fwhm8/wsub-05_t1w_preproc.nii
180514-11:05:02,996 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:05:03,660 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-11:05:04,708 workflow INFO:
[Job 27] Completed (spmflow.datasink).
180514-11:05:04,710 workflow INFO:
[Job 45] Completed (spmflow.gunzip).
180514-11:05:04,716 workflow INFO:
[MultiProc] Running 6 tasks, and 3 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:05:04,778 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_03/normalize".180514-11:05:04,778 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_02/selectfiles".
180514-11:05:04,789 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-11:05:04,806 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-11:05:04,860 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")
180514-11:05:05,56 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:05:06,21 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:05:06,709 workflow INFO:
[Job 2] Completed (spmflow.normalize).
180514-11:05:06,712 workflow INFO:
[Job 30] Completed (spmflow.normalize).
180514-11:05:06,715 workflow INFO:
[Job 48] Completed (spmflow.selectfiles).
180514-11:05:06,721 workflow INFO:
[MultiProc] Running 5 tasks, and 4 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:05:06,782 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_09/datasink".
180514-11:05:06,794 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")180514-11:05:06,795 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_05/datasink".
180514-11:05:06,798 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_02/gunzip".
180514-11:05:06,807 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_09/wcon_0001.nii -> /output/datasink/norm_spm/sub-09_fwhm8/wcon_0001.nii
180514-11:05:06,817 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")180514-11:05:06,822 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_09/wcon_0002.nii -> /output/datasink/norm_spm/sub-09_fwhm8/wcon_0002.nii
180514-11:05:06,809 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:05:06,839 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_09/wcon_0003.nii -> /output/datasink/norm_spm/sub-09_fwhm8/wcon_0003.nii
180514-11:05:06,842 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_05/wcon_0001.nii -> /output/datasink/norm_spm/sub-05_fwhm4/wcon_0001.nii
180514-11:05:06,858 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_09/wcon_0004.nii -> /output/datasink/norm_spm/sub-09_fwhm8/wcon_0004.nii
180514-11:05:06,865 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_05/wcon_0002.nii -> /output/datasink/norm_spm/sub-05_fwhm4/wcon_0002.nii180514-11:05:06,868 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_09/wcon_0005.nii -> /output/datasink/norm_spm/sub-09_fwhm8/wcon_0005.nii
180514-11:05:06,881 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_05/wcon_0003.nii -> /output/datasink/norm_spm/sub-05_fwhm4/wcon_0003.nii180514-11:05:06,885 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_09/wcon_0006.nii -> /output/datasink/norm_spm/sub-09_fwhm8/wcon_0006.nii
180514-11:05:06,896 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_05/wcon_0004.nii -> /output/datasink/norm_spm/sub-05_fwhm4/wcon_0004.nii
180514-11:05:06,905 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_09/wcon_0007.nii -> /output/datasink/norm_spm/sub-09_fwhm8/wcon_0007.nii180514-11:05:06,907 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_05/wcon_0005.nii -> /output/datasink/norm_spm/sub-05_fwhm4/wcon_0005.nii
180514-11:05:06,920 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_05/wcon_0006.nii -> /output/datasink/norm_spm/sub-05_fwhm4/wcon_0006.nii
180514-11:05:06,926 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_09/wess_0008.nii -> /output/datasink/norm_spm/sub-09_fwhm8/wess_0008.nii
180514-11:05:06,927 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_05/wcon_0007.nii -> /output/datasink/norm_spm/sub-05_fwhm4/wcon_0007.nii
180514-11:05:06,933 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_09/wess_0009.nii -> /output/datasink/norm_spm/sub-09_fwhm8/wess_0009.nii180514-11:05:06,944 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_05/wess_0008.nii -> /output/datasink/norm_spm/sub-05_fwhm4/wess_0008.nii
180514-11:05:06,950 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_05/wess_0009.nii -> /output/datasink/norm_spm/sub-05_fwhm4/wess_0009.nii
180514-11:05:06,957 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_09/wsub-09_t1w_preproc.nii -> /output/datasink/norm_spm/sub-09_fwhm8/wsub-09_t1w_preproc.nii180514-11:05:06,963 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_05/wsub-05_t1w_preproc.nii -> /output/datasink/norm_spm/sub-05_fwhm4/wsub-05_t1w_preproc.nii
180514-11:05:06,977 workflow INFO:
[Node] Finished "spmflow.datasink".180514-11:05:06,978 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:05:07,795 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:05:08,211 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-11:05:08,716 workflow INFO:
[Job 10] Completed (spmflow.normalize).
180514-11:05:08,719 workflow INFO:
[Job 3] Completed (spmflow.datasink).
180514-11:05:08,722 workflow INFO:
[Job 31] Completed (spmflow.datasink).
180514-11:05:08,724 workflow INFO:
[Job 49] Completed (spmflow.gunzip).
180514-11:05:08,728 workflow INFO:
[MultiProc] Running 4 tasks, and 3 jobs ready. Free memory (GB): 53.14/53.94, Free processors: 4/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:05:08,794 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_08/datasink".
180514-11:05:08,802 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_02/normalize".180514-11:05:08,809 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:05:08,814 workflow INFO:
[Node] Setting-up "spmflow.selectfiles" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_02/selectfiles".180514-11:05:08,815 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_08/wcon_0001.nii -> /output/datasink/norm_spm/sub-08_fwhm8/wcon_0001.nii
180514-11:05:08,838 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_08/wcon_0002.nii -> /output/datasink/norm_spm/sub-08_fwhm8/wcon_0002.nii
180514-11:05:08,839 workflow INFO:
[Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
180514-11:05:08,863 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_08/wcon_0003.nii -> /output/datasink/norm_spm/sub-08_fwhm8/wcon_0003.nii
180514-11:05:08,877 workflow INFO:
[Node] Finished "spmflow.selectfiles".
180514-11:05:08,888 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_08/wcon_0004.nii -> /output/datasink/norm_spm/sub-08_fwhm8/wcon_0004.nii
180514-11:05:08,915 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_08/wcon_0005.nii -> /output/datasink/norm_spm/sub-08_fwhm8/wcon_0005.nii
180514-11:05:08,920 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")180514-11:05:08,923 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_08/wcon_0006.nii -> /output/datasink/norm_spm/sub-08_fwhm8/wcon_0006.nii
180514-11:05:08,940 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_08/wcon_0007.nii -> /output/datasink/norm_spm/sub-08_fwhm8/wcon_0007.nii
180514-11:05:08,944 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_08/wess_0008.nii -> /output/datasink/norm_spm/sub-08_fwhm8/wess_0008.nii
180514-11:05:08,950 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_08/wess_0009.nii -> /output/datasink/norm_spm/sub-08_fwhm8/wess_0009.nii
180514-11:05:08,955 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_08/wsub-08_t1w_preproc.nii -> /output/datasink/norm_spm/sub-08_fwhm8/wsub-08_t1w_preproc.nii
180514-11:05:08,964 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:05:10,723 workflow INFO:
[Job 11] Completed (spmflow.datasink).
180514-11:05:10,726 workflow INFO:
[Job 52] Completed (spmflow.selectfiles).
180514-11:05:10,730 workflow INFO:
[MultiProc] Running 5 tasks, and 1 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:05:10,784 workflow INFO:
[Node] Setting-up "spmflow.gunzip" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_02/gunzip".
180514-11:05:10,794 workflow INFO:
[Node] Running "gunzip" ("nipype.algorithms.misc.Gunzip")
180514-11:05:12,386 workflow INFO:
[Node] Finished "spmflow.gunzip".
180514-11:05:12,725 workflow INFO:
[Job 53] Completed (spmflow.gunzip).
180514-11:05:12,730 workflow INFO:
[MultiProc] Running 5 tasks, and 1 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:05:12,792 workflow INFO:
[Node] Setting-up "spmflow.normalize" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_02/normalize".
180514-11:05:12,924 workflow INFO:
[Node] Running "normalize" ("nipype.interfaces.spm.preprocess.Normalize12")
180514-11:05:14,729 workflow INFO:
[MultiProc] Running 6 tasks, and 0 jobs ready. Free memory (GB): 52.74/53.94, Free processors: 2/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:08:56,120 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:08:56,937 workflow INFO:
[Job 38] Completed (spmflow.normalize).
180514-11:08:56,940 workflow INFO:
[MultiProc] Running 5 tasks, and 1 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:08:56,995 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_04/datasink".
180514-11:08:57,9 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:08:57,15 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_04/wcon_0001.nii -> /output/datasink/norm_spm/sub-04_fwhm4/wcon_0001.nii
180514-11:08:57,31 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_04/wcon_0002.nii -> /output/datasink/norm_spm/sub-04_fwhm4/wcon_0002.nii
180514-11:08:57,37 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_04/wcon_0003.nii -> /output/datasink/norm_spm/sub-04_fwhm4/wcon_0003.nii
180514-11:08:57,50 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_04/wcon_0004.nii -> /output/datasink/norm_spm/sub-04_fwhm4/wcon_0004.nii
180514-11:08:57,55 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_04/wcon_0005.nii -> /output/datasink/norm_spm/sub-04_fwhm4/wcon_0005.nii
180514-11:08:57,63 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_04/wcon_0006.nii -> /output/datasink/norm_spm/sub-04_fwhm4/wcon_0006.nii
180514-11:08:57,71 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_04/wcon_0007.nii -> /output/datasink/norm_spm/sub-04_fwhm4/wcon_0007.nii
180514-11:08:57,78 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_04/wess_0008.nii -> /output/datasink/norm_spm/sub-04_fwhm4/wess_0008.nii
180514-11:08:57,89 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_04/wess_0009.nii -> /output/datasink/norm_spm/sub-04_fwhm4/wess_0009.nii
180514-11:08:57,102 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_04/wsub-04_t1w_preproc.nii -> /output/datasink/norm_spm/sub-04_fwhm4/wsub-04_t1w_preproc.nii
180514-11:08:57,119 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:08:58,938 workflow INFO:
[Job 39] Completed (spmflow.datasink).
180514-11:08:58,941 workflow INFO:
[MultiProc] Running 5 tasks, and 0 jobs ready. Free memory (GB): 52.94/53.94, Free processors: 3/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:09:27,197 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:09:28,966 workflow INFO:
[Job 34] Completed (spmflow.normalize).
180514-11:09:28,968 workflow INFO:
[MultiProc] Running 4 tasks, and 1 jobs ready. Free memory (GB): 53.14/53.94, Free processors: 4/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:09:29,12 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_04/datasink".
180514-11:09:29,24 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:09:29,30 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_04/wcon_0001.nii -> /output/datasink/norm_spm/sub-04_fwhm8/wcon_0001.nii
180514-11:09:29,33 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_04/wcon_0002.nii -> /output/datasink/norm_spm/sub-04_fwhm8/wcon_0002.nii
180514-11:09:29,38 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_04/wcon_0003.nii -> /output/datasink/norm_spm/sub-04_fwhm8/wcon_0003.nii
180514-11:09:29,45 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_04/wcon_0004.nii -> /output/datasink/norm_spm/sub-04_fwhm8/wcon_0004.nii
180514-11:09:29,48 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_04/wcon_0005.nii -> /output/datasink/norm_spm/sub-04_fwhm8/wcon_0005.nii
180514-11:09:29,53 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_04/wcon_0006.nii -> /output/datasink/norm_spm/sub-04_fwhm8/wcon_0006.nii
180514-11:09:29,55 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_04/wcon_0007.nii -> /output/datasink/norm_spm/sub-04_fwhm8/wcon_0007.nii
180514-11:09:29,59 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_04/wess_0008.nii -> /output/datasink/norm_spm/sub-04_fwhm8/wess_0008.nii
180514-11:09:29,63 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_04/wess_0009.nii -> /output/datasink/norm_spm/sub-04_fwhm8/wess_0009.nii
180514-11:09:29,67 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_04/wsub-04_t1w_preproc.nii -> /output/datasink/norm_spm/sub-04_fwhm8/wsub-04_t1w_preproc.nii
180514-11:09:29,77 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:09:29,864 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:09:30,968 workflow INFO:
[Job 42] Completed (spmflow.normalize).
180514-11:09:30,970 workflow INFO:
[Job 35] Completed (spmflow.datasink).
180514-11:09:30,972 workflow INFO:
[MultiProc] Running 3 tasks, and 1 jobs ready. Free memory (GB): 53.34/53.94, Free processors: 5/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
* spmflow.normalize
180514-11:09:31,26 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_03/datasink".
180514-11:09:31,35 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:09:31,38 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_03/wcon_0001.nii -> /output/datasink/norm_spm/sub-03_fwhm8/wcon_0001.nii
180514-11:09:31,41 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_03/wcon_0002.nii -> /output/datasink/norm_spm/sub-03_fwhm8/wcon_0002.nii
180514-11:09:31,44 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_03/wcon_0003.nii -> /output/datasink/norm_spm/sub-03_fwhm8/wcon_0003.nii
180514-11:09:31,50 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_03/wcon_0004.nii -> /output/datasink/norm_spm/sub-03_fwhm8/wcon_0004.nii
180514-11:09:31,52 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_03/wcon_0005.nii -> /output/datasink/norm_spm/sub-03_fwhm8/wcon_0005.nii
180514-11:09:31,55 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_03/wcon_0006.nii -> /output/datasink/norm_spm/sub-03_fwhm8/wcon_0006.nii
180514-11:09:31,58 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_03/wcon_0007.nii -> /output/datasink/norm_spm/sub-03_fwhm8/wcon_0007.nii
180514-11:09:31,60 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_03/wess_0008.nii -> /output/datasink/norm_spm/sub-03_fwhm8/wess_0008.nii
180514-11:09:31,63 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_03/wess_0009.nii -> /output/datasink/norm_spm/sub-03_fwhm8/wess_0009.nii
180514-11:09:31,66 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_03/wsub-03_t1w_preproc.nii -> /output/datasink/norm_spm/sub-03_fwhm8/wsub-03_t1w_preproc.nii
180514-11:09:31,74 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:09:32,465 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:09:32,970 workflow INFO:
[Job 46] Completed (spmflow.normalize).
180514-11:09:32,971 workflow INFO:
[Job 43] Completed (spmflow.datasink).
180514-11:09:32,973 workflow INFO:
[MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 53.54/53.94, Free processors: 6/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
180514-11:09:33,17 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_03/datasink".
180514-11:09:33,28 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:09:33,31 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_03/wcon_0001.nii -> /output/datasink/norm_spm/sub-03_fwhm4/wcon_0001.nii
180514-11:09:33,34 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_03/wcon_0002.nii -> /output/datasink/norm_spm/sub-03_fwhm4/wcon_0002.nii
180514-11:09:33,37 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_03/wcon_0003.nii -> /output/datasink/norm_spm/sub-03_fwhm4/wcon_0003.nii
180514-11:09:33,39 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_03/wcon_0004.nii -> /output/datasink/norm_spm/sub-03_fwhm4/wcon_0004.nii
180514-11:09:33,42 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_03/wcon_0005.nii -> /output/datasink/norm_spm/sub-03_fwhm4/wcon_0005.nii
180514-11:09:33,45 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_03/wcon_0006.nii -> /output/datasink/norm_spm/sub-03_fwhm4/wcon_0006.nii
180514-11:09:33,48 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_03/wcon_0007.nii -> /output/datasink/norm_spm/sub-03_fwhm4/wcon_0007.nii
180514-11:09:33,50 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_03/wess_0008.nii -> /output/datasink/norm_spm/sub-03_fwhm4/wess_0008.nii
180514-11:09:33,53 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_03/wess_0009.nii -> /output/datasink/norm_spm/sub-03_fwhm4/wess_0009.nii
180514-11:09:33,56 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_03/wsub-03_t1w_preproc.nii -> /output/datasink/norm_spm/sub-03_fwhm4/wsub-03_t1w_preproc.nii
180514-11:09:33,64 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:09:34,972 workflow INFO:
[Job 47] Completed (spmflow.datasink).
180514-11:09:34,974 workflow INFO:
[MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 53.54/53.94, Free processors: 6/8.
Currently running:
* spmflow.normalize
* spmflow.normalize
180514-11:10:06,171 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:10:07,0 workflow INFO:
[Job 54] Completed (spmflow.normalize).
180514-11:10:07,3 workflow INFO:
[MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 53.74/53.94, Free processors: 7/8.
Currently running:
* spmflow.normalize
180514-11:10:07,52 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_4_subject_id_02/datasink".
180514-11:10:07,62 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:10:07,68 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_02/wcon_0001.nii -> /output/datasink/norm_spm/sub-02_fwhm4/wcon_0001.nii
180514-11:10:07,72 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_02/wcon_0002.nii -> /output/datasink/norm_spm/sub-02_fwhm4/wcon_0002.nii
180514-11:10:07,76 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_02/wcon_0003.nii -> /output/datasink/norm_spm/sub-02_fwhm4/wcon_0003.nii
180514-11:10:07,82 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_02/wcon_0004.nii -> /output/datasink/norm_spm/sub-02_fwhm4/wcon_0004.nii
180514-11:10:07,85 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_02/wcon_0005.nii -> /output/datasink/norm_spm/sub-02_fwhm4/wcon_0005.nii
180514-11:10:07,88 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_02/wcon_0006.nii -> /output/datasink/norm_spm/sub-02_fwhm4/wcon_0006.nii
180514-11:10:07,90 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_02/wcon_0007.nii -> /output/datasink/norm_spm/sub-02_fwhm4/wcon_0007.nii
180514-11:10:07,97 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_02/wess_0008.nii -> /output/datasink/norm_spm/sub-02_fwhm4/wess_0008.nii
180514-11:10:07,100 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_02/wess_0009.nii -> /output/datasink/norm_spm/sub-02_fwhm4/wess_0009.nii
180514-11:10:07,104 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_4_subject_id_02/wsub-02_t1w_preproc.nii -> /output/datasink/norm_spm/sub-02_fwhm4/wsub-02_t1w_preproc.nii
180514-11:10:07,111 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:10:09,2 workflow INFO:
[Job 55] Completed (spmflow.datasink).
180514-11:10:09,5 workflow INFO:
[MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 53.74/53.94, Free processors: 7/8.
Currently running:
* spmflow.normalize
180514-11:10:24,593 workflow INFO:
[Node] Finished "spmflow.normalize".
180514-11:10:25,18 workflow INFO:
[Job 50] Completed (spmflow.normalize).
180514-11:10:25,25 workflow INFO:
[MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
180514-11:10:25,87 workflow INFO:
[Node] Setting-up "spmflow.datasink" in "/output/workingdir/spmflow/_fwhm_id_8_subject_id_02/datasink".
180514-11:10:25,96 workflow INFO:
[Node] Running "datasink" ("nipype.interfaces.io.DataSink")
180514-11:10:25,101 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_02/wcon_0001.nii -> /output/datasink/norm_spm/sub-02_fwhm8/wcon_0001.nii
180514-11:10:25,105 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_02/wcon_0002.nii -> /output/datasink/norm_spm/sub-02_fwhm8/wcon_0002.nii
180514-11:10:25,107 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_02/wcon_0003.nii -> /output/datasink/norm_spm/sub-02_fwhm8/wcon_0003.nii
180514-11:10:25,110 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_02/wcon_0004.nii -> /output/datasink/norm_spm/sub-02_fwhm8/wcon_0004.nii
180514-11:10:25,113 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_02/wcon_0005.nii -> /output/datasink/norm_spm/sub-02_fwhm8/wcon_0005.nii
180514-11:10:25,116 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_02/wcon_0006.nii -> /output/datasink/norm_spm/sub-02_fwhm8/wcon_0006.nii
180514-11:10:25,119 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_02/wcon_0007.nii -> /output/datasink/norm_spm/sub-02_fwhm8/wcon_0007.nii
180514-11:10:25,123 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_02/wess_0008.nii -> /output/datasink/norm_spm/sub-02_fwhm8/wess_0008.nii
180514-11:10:25,126 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_02/wess_0009.nii -> /output/datasink/norm_spm/sub-02_fwhm8/wess_0009.nii
180514-11:10:25,128 interface INFO:
sub: /output/datasink/norm_spm/_fwhm_id_8_subject_id_02/wsub-02_t1w_preproc.nii -> /output/datasink/norm_spm/sub-02_fwhm8/wsub-02_t1w_preproc.nii
180514-11:10:25,134 workflow INFO:
[Node] Finished "spmflow.datasink".
180514-11:10:27,20 workflow INFO:
[Job 51] Completed (spmflow.datasink).
180514-11:10:27,28 workflow INFO:
[MultiProc] Running 0 tasks, and 0 jobs ready. Free memory (GB): 53.94/53.94, Free processors: 8/8.
Out[ ]:
<networkx.classes.digraph.DiGraph at 0x7fef16f40400>
Comparison between ANTs and SPM normalization¶
Now that we ran the normalization with ANTs and SPM, let us compare their output.
In [ ]:
from nilearn.plotting import plot_stat_map
%matplotlib inline
anatimg = '/data/ds000114/derivatives/fmriprep/mni_icbm152_nlin_asym_09c/1mm_T1.nii.gz'
First, let's compare the normalization of the anatomical images:
In [ ]:
plot_stat_map(
'/data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_space-mni152nlin2009casym_preproc.nii.gz',
title='anatomy - ANTs (normalized to ICBM152)', bg_img=anatimg,
threshold=200, display_mode='ortho', cut_coords=(-50, 0, -10));
plot_stat_map(
'/output/datasink/norm_spm/sub-02_fwhm4/wsub-02_t1w_preproc.nii',
title='anatomy - SPM (normalized to SPM\'s TPM)', bg_img=anatimg,
threshold=200, display_mode='ortho', cut_coords=(-50, 0, -10));
And what about the contrast images for Finger > others?
In [ ]:
plot_stat_map(
'/output/datasink/norm_ants/sub-02_fwhm8/con_0005_trans.nii', title='contrast5 - fwhm=8 - ANTs',
bg_img=anatimg, threshold=2, vmax=5, display_mode='ortho', cut_coords=(-39, -37, 56));
plot_stat_map(
'/output/datasink/norm_spm/sub-02_fwhm8/wcon_0005.nii', title='contrast5 - fwhm=8 - SPM',
bg_img=anatimg, threshold=2, vmax=5, display_mode='ortho', cut_coords=(-39, -37, 56));
In [ ]:
from nilearn.plotting import plot_glass_brain
plot_glass_brain(
'/output/datasink/norm_ants/sub-02_fwhm8/con_0005_trans.nii', colorbar=True,
threshold=3, display_mode='lyrz', black_bg=True, vmax=6, title='contrast5 - fwhm=8 - ANTs')
plot_glass_brain(
'/output/datasink/norm_spm/sub-02_fwhm8/wcon_0005.nii', colorbar=True,
threshold=3, display_mode='lyrz', black_bg=True, vmax=6, title='contrast5 - fwhm=8 - SPM');
