interfaces.elastix.utils

EditTransform

Link to code

Manipulates an existing transform file generated with elastix

Example

>>> from nipype.interfaces.elastix import EditTransform
>>> tfm = EditTransform()
>>> tfm.inputs.transform_file = 'TransformParameters.0.txt'  # doctest: +SKIP
>>> tfm.inputs.reference_image = 'fixed1.nii'  # doctest: +SKIP
>>> tfm.inputs.output_type = 'unsigned char'
>>> tfm.run() # doctest: +SKIP

Inputs:

[Mandatory]
transform_file: (an existing file name)
        transform-parameter file, only 1

[Optional]
interpolation: ('cubic' or 'linear' or 'nearest', nipype default
         value: cubic)
        set a new interpolator for transformation
        flag: FinalBSplineInterpolationOrder
output_file: (a file name)
        the filename for the resulting transform file
output_format: ('nii.gz' or 'nii' or 'mhd' or 'hdr' or 'vtk')
        set a new image format for resampled images
        flag: ResultImageFormat
output_type: ('float' or 'unsigned char' or 'unsigned short' or
         'short' or 'unsigned long' or 'long' or 'double')
        set a new output pixel type for resampled images
        flag: ResultImagePixelType
reference_image: (an existing file name)
        set a new reference image to change the target coordinate system.

Outputs:

output_file: (an existing file name)
        output transform file